Variant report

Variant	rs74104398
Chromosome Location	chr13:97965563-97965564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97957575..97959438-chr13:97964088..97966414,2	MCF-7	breast:
2	chr13:97964833..97966698-chr13:97969721..97972103,2	K562	blood:
3	chr13:97963342..97965987-chr13:97989189..97990834,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55768634	1.00[AFR][1000 genomes]
rs74103237	1.00[AFR][1000 genomes]
rs74106909	1.00[AFR][1000 genomes]
rs74106916	1.00[AFR][1000 genomes]
rs74106920	1.00[AFR][1000 genomes]
rs74106933	1.00[AFR][1000 genomes]
rs74106936	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97925800-97987200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr13:97933200-97970400	Weak transcription	Placenta	Placenta
3	chr13:97942800-97995200	Weak transcription	Thymus	Thymus
4	chr13:97948600-97971600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr13:97950000-97971200	Weak transcription	Stomach Mucosa	stomach
6	chr13:97954400-97986200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr13:97955000-97987000	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr13:97955200-97965600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr13:97955200-97968200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr13:97955200-97970400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr13:97955200-97986800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr13:97955400-97971400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr13:97955800-97965800	Weak transcription	Lung	lung
14	chr13:97959000-97967800	Weak transcription	Esophagus	oesophagus
15	chr13:97959000-97970400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr13:97959000-97971200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr13:97959200-97968000	Weak transcription	Fetal Intestine Small	intestine
18	chr13:97959200-97970400	Weak transcription	Small Intestine	intestine
19	chr13:97959400-97988800	Weak transcription	Fetal Intestine Large	intestine
20	chr13:97960800-97967800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr13:97961000-97973800	Weak transcription	NHEK	skin
22	chr13:97961200-97965600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr13:97961200-97967600	Weak transcription	Aorta	Aorta
24	chr13:97961400-97965800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr13:97961400-97965800	Weak transcription	Fetal Stomach	stomach
26	chr13:97961400-97967600	Weak transcription	Right Ventricle	heart
27	chr13:97961400-97968000	Weak transcription	Fetal Muscle Trunk	muscle
28	chr13:97961400-97975200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr13:97961400-97987200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr13:97961600-97967600	Weak transcription	Adipose Nuclei	Adipose
31	chr13:97961600-97971000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr13:97961600-97971200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr13:97961600-97975400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr13:97961800-97965800	Weak transcription	Primary T cells from cord blood	blood
35	chr13:97961800-97970400	Weak transcription	Fetal Kidney	kidney
36	chr13:97961800-97970400	Weak transcription	HSMM	muscle
37	chr13:97961800-97971000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr13:97961800-97975200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr13:97961800-97977600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr13:97961800-97978000	Weak transcription	HMEC	breast
41	chr13:97962000-97965800	Weak transcription	Ovary	ovary
42	chr13:97962000-97967800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr13:97962000-97971000	Weak transcription	Gastric	stomach
44	chr13:97962000-97979200	Weak transcription	HUVEC	blood vessel
45	chr13:97962000-97991200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr13:97962200-97966000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr13:97962400-97965800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr13:97962400-97967600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr13:97962400-97971000	Weak transcription	NH-A	brain
50	chr13:97962400-97978200	Weak transcription	K562	blood

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