Variant report

Variant	rs55772034
Chromosome Location	chr7:69254999-69255000
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:69247731..69250011-chr7:69253373..69255681,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2865803	0.82[EUR][1000 genomes]
rs55666499	0.92[EUR][1000 genomes]
rs55752344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55773107	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56109540	0.92[EUR][1000 genomes]
rs56166692	0.92[EUR][1000 genomes]
rs7810785	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69246800-69256200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:69247000-69264400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:69247200-69262200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:69249600-69255800	Weak transcription	Right Atrium	heart
5	chr7:69249600-69258800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr7:69249800-69269600	Weak transcription	Brain Angular Gyrus	brain
7	chr7:69250200-69261200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:69250600-69255800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr7:69252200-69256600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:69252200-69256800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:69252400-69260400	Weak transcription	GM12878-XiMat	blood
12	chr7:69252600-69255200	Enhancers	Adipose Nuclei	Adipose
13	chr7:69252800-69255000	Enhancers	Fetal Lung	lung
14	chr7:69252800-69257800	Enhancers	Brain Hippocampus Middle	brain
15	chr7:69253000-69255000	Enhancers	Fetal Brain Male	brain
16	chr7:69253200-69257200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr7:69253400-69278800	Weak transcription	Fetal Stomach	stomach
18	chr7:69253600-69255600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr7:69253600-69255800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr7:69253600-69255800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr7:69253600-69255800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr7:69253600-69264600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr7:69253800-69255400	Weak transcription	Brain Germinal Matrix	brain
24	chr7:69253800-69255600	Weak transcription	Brain Anterior Caudate	brain
25	chr7:69253800-69258800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr7:69253800-69258800	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr7:69254000-69255000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr7:69254200-69255200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr7:69254200-69256400	Enhancers	Fetal Brain Female	brain
30	chr7:69254200-69259200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr7:69254400-69255000	Enhancers	Colon Smooth Muscle	Colon
32	chr7:69254400-69255600	Weak transcription	Brain Substantia Nigra	brain
33	chr7:69254400-69265600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr7:69254600-69255000	Enhancers	HSMMtube	muscle
35	chr7:69254600-69255800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:69254600-69258800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr7:69254800-69255800	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr7:69254800-69256000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr7:69254800-69259000	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links