Variant report

Variant	rs55773107
Chromosome Location	chr7:69150383-69150384
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2865803	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55666499	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55752344	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55772034	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56109540	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56166692	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6946791	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6949804	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6950764	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6954630	1.00[ASN][1000 genomes]
rs6973940	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs733883	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781283	1.00[ASN][1000 genomes]
rs7786101	1.00[ASN][1000 genomes]
rs7810785	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023885	chr7:68894896-69158290	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538915	chr7:68894896-69158290	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv428169	chr7:69021482-69196743	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1034380	chr7:69137914-69171449	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
10	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69139800-69150800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:69143800-69151600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr7:69143800-69156600	Weak transcription	Left Ventricle	heart
4	chr7:69144400-69152800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr7:69146800-69150400	Enhancers	Brain Germinal Matrix	brain
6	chr7:69147200-69151000	Enhancers	GM12878-XiMat	blood
7	chr7:69147600-69150800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr7:69147800-69150400	Enhancers	Fetal Brain Female	brain
9	chr7:69147800-69150600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr7:69147800-69151000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr7:69148000-69152800	Weak transcription	Fetal Heart	heart
12	chr7:69148400-69155400	Weak transcription	Lung	lung
13	chr7:69148400-69166200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr7:69148600-69151000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr7:69148800-69150400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr7:69148800-69150600	Enhancers	Brain Anterior Caudate	brain
17	chr7:69148800-69150600	Enhancers	Dnd41	blood
18	chr7:69149000-69150800	Enhancers	Fetal Lung	lung
19	chr7:69149000-69151000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:69149000-69151000	Enhancers	Brain Hippocampus Middle	brain
21	chr7:69149000-69151000	Enhancers	Ovary	ovary
22	chr7:69149000-69151400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr7:69149200-69150400	Enhancers	Fetal Kidney	kidney
24	chr7:69149200-69150400	Enhancers	Fetal Muscle Leg	muscle
25	chr7:69149200-69150800	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr7:69149200-69151000	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr7:69149200-69151000	Enhancers	Brain Substantia Nigra	brain
28	chr7:69149200-69151200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr7:69149400-69151000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:69149400-69155400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr7:69149600-69150400	Enhancers	Primary hematopoietic stem cells	blood
32	chr7:69149600-69150600	Enhancers	Adipose Nuclei	Adipose
33	chr7:69149800-69150400	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr7:69149800-69150400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr7:69149800-69150600	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr7:69149800-69150600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr7:69149800-69150600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr7:69149800-69150600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr7:69149800-69150600	Enhancers	Colon Smooth Muscle	Colon
40	chr7:69149800-69151000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr7:69150000-69150400	Enhancers	Fetal Thymus	thymus
42	chr7:69150000-69150400	Enhancers	Psoas Muscle	Psoas
43	chr7:69150000-69150400	Flanking Active TSS	Stomach Smooth Muscle	stomach
44	chr7:69150000-69150600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr7:69150000-69150600	Enhancers	Brain Cingulate Gyrus	brain
46	chr7:69150000-69150800	Enhancers	Small Intestine	intestine
47	chr7:69150000-69151000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr7:69150200-69150400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr7:69150200-69150400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr7:69150200-69150400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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