Variant report

Variant	rs56166692
Chromosome Location	chr7:69309089-69309090
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:69305548..69307100-chr7:69308617..69310960,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12113078	1.00[ASN][1000 genomes]
rs17141070	1.00[ASN][1000 genomes]
rs2865803	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55666499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55752344	0.92[EUR][1000 genomes]
rs55772034	0.92[EUR][1000 genomes]
rs55773107	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56109540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6944743	1.00[ASN][1000 genomes]
rs73158398	1.00[ASN][1000 genomes]
rs73158400	1.00[ASN][1000 genomes]
rs73160123	1.00[ASN][1000 genomes]
rs73160136	1.00[ASN][1000 genomes]
rs73160148	1.00[ASN][1000 genomes]
rs73160166	1.00[ASN][1000 genomes]
rs7781283	1.00[ASN][1000 genomes]
rs7810785	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv532781	chr7:69297250-69330796	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv538919	chr7:69298265-69311376	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69293600-69310800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:69303000-69310600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:69304000-69311600	Enhancers	Primary B cells from peripheral blood	blood
4	chr7:69305200-69312800	Weak transcription	Dnd41	blood
5	chr7:69305600-69310600	Weak transcription	Brain Anterior Caudate	brain
6	chr7:69306000-69310400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:69306400-69310400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr7:69306400-69310800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:69306400-69312800	Weak transcription	Fetal Lung	lung
10	chr7:69306600-69310200	Weak transcription	Brain Germinal Matrix	brain
11	chr7:69306600-69310400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr7:69306600-69310400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr7:69306600-69310600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:69306600-69310800	Weak transcription	Fetal Brain Male	brain
15	chr7:69306600-69312600	Weak transcription	Ovary	ovary
16	chr7:69306800-69310800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr7:69307600-69311400	Enhancers	Primary B cells from cord blood	blood
18	chr7:69308200-69309800	Flanking Active TSS	GM12878-XiMat	blood
19	chr7:69308600-69309200	Enhancers	Brain Hippocampus Middle	brain
20	chr7:69309000-69309400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr7:69309000-69309800	Enhancers	Fetal Brain Female	brain
22	chr7:69309000-69311400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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