Variant report

Variant	rs55772947
Chromosome Location	chr10:97489564-97489565
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs56256708	0.88[AFR][1000 genomes]
rs56703153	0.88[AFR][1000 genomes]
rs57566786	1.00[AFR][1000 genomes]
rs57713066	1.00[AFR][1000 genomes]
rs58019139	1.00[AFR][1000 genomes]
rs61119988	1.00[AFR][1000 genomes]
rs74150974	0.88[AFR][1000 genomes]
rs74150977	0.88[AFR][1000 genomes]
rs74150980	1.00[AFR][1000 genomes]
rs74150982	1.00[AFR][1000 genomes]
rs74150985	1.00[AFR][1000 genomes]
rs74150987	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97488000-97490000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr10:97488200-97491000	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr10:97488400-97494000	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:97488600-97491600	Enhancers	Primary B cells from cord blood	blood
5	chr10:97489000-97490000	Enhancers	Adipose Nuclei	Adipose
6	chr10:97489000-97490200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:97489000-97491000	Enhancers	Primary hematopoietic stem cells	blood
8	chr10:97489000-97491200	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr10:97489000-97491400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr10:97489200-97490200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:97489400-97489600	Flanking Active TSS	HUVEC	blood vessel
12	chr10:97489400-97490000	Enhancers	Stomach Mucosa	stomach
13	chr10:97489400-97490800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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