Variant report

Variant	rs74150980
Chromosome Location	chr10:97423779-97423780
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97415761..97418551-chr10:97421893..97424781,3	K562	blood:
2	chr10:97417025..97421162-chr10:97421538..97425770,6	K562	blood:

Variant related genes	Relation type
ENSG00000059573	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs55772947	1.00[AFR][1000 genomes]
rs56256708	0.88[AFR][1000 genomes]
rs56703153	0.88[AFR][1000 genomes]
rs57566786	1.00[AFR][1000 genomes]
rs57713066	1.00[AFR][1000 genomes]
rs58019139	1.00[AFR][1000 genomes]
rs61119988	1.00[AFR][1000 genomes]
rs74150974	0.88[AFR][1000 genomes]
rs74150977	0.88[AFR][1000 genomes]
rs74150982	1.00[AFR][1000 genomes]
rs74150985	1.00[AFR][1000 genomes]
rs74150987	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97416600-97441000	Weak transcription	Spleen	Spleen
2	chr10:97416800-97441600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:97416800-97442400	Weak transcription	Small Intestine	intestine
4	chr10:97416800-97443400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:97417000-97423800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr10:97417000-97424000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:97417000-97428600	Weak transcription	Fetal Kidney	kidney
8	chr10:97417000-97434800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr10:97417000-97434800	Weak transcription	Ovary	ovary
10	chr10:97417000-97434800	Weak transcription	HUVEC	blood vessel
11	chr10:97417000-97436200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:97417000-97436400	Weak transcription	HMEC	breast
13	chr10:97417000-97437400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr10:97417000-97439800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:97417000-97439800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr10:97417000-97439800	Weak transcription	Brain Substantia Nigra	brain
17	chr10:97417000-97441000	Weak transcription	HSMMtube	muscle
18	chr10:97417000-97442400	Weak transcription	Aorta	Aorta
19	chr10:97417000-97444200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr10:97417000-97445200	Weak transcription	Colonic Mucosa	Colon
21	chr10:97417000-97445800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr10:97417000-97445800	Weak transcription	NHLF	lung
23	chr10:97417200-97426400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr10:97417200-97426800	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr10:97417200-97430400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr10:97417200-97435400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr10:97417200-97435400	Weak transcription	Stomach Mucosa	stomach
28	chr10:97417200-97435600	Weak transcription	NH-A	brain
29	chr10:97417200-97436400	Weak transcription	NHDF-Ad	bronchial
30	chr10:97417200-97437400	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr10:97417200-97438800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr10:97417200-97438800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr10:97417200-97439000	Weak transcription	Fetal Brain Male	brain
34	chr10:97417200-97439600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr10:97417200-97439800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr10:97417200-97440000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr10:97417200-97441000	Weak transcription	Thymus	Thymus
38	chr10:97417200-97441800	Weak transcription	Brain Angular Gyrus	brain
39	chr10:97417200-97442400	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr10:97417200-97444400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr10:97417200-97445800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr10:97417400-97432600	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr10:97417400-97439800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr10:97417600-97439000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr10:97420400-97426800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:97420600-97427000	Weak transcription	HSMM	muscle
47	chr10:97420600-97428400	Weak transcription	Osteobl	bone
48	chr10:97421800-97441800	Weak transcription	Gastric	stomach
49	chr10:97422000-97424400	Strong transcription	Fetal Stomach	stomach
50	chr10:97422000-97434400	Weak transcription	A549	lung

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