Variant report

Variant	rs58019139
Chromosome Location	chr10:97456729-97456730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs55772947	1.00[AFR][1000 genomes]
rs56256708	0.88[AFR][1000 genomes]
rs56703153	0.88[AFR][1000 genomes]
rs57566786	1.00[AFR][1000 genomes]
rs57713066	1.00[AFR][1000 genomes]
rs61119988	1.00[AFR][1000 genomes]
rs74150974	0.88[AFR][1000 genomes]
rs74150977	0.88[AFR][1000 genomes]
rs74150980	1.00[AFR][1000 genomes]
rs74150982	1.00[AFR][1000 genomes]
rs74150985	1.00[AFR][1000 genomes]
rs74150987	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97454400-97457200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:97454600-97457200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr10:97456000-97459000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:97456200-97456800	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr10:97456200-97458800	Enhancers	Primary B cells from cord blood	blood
6	chr10:97456400-97457800	Enhancers	GM12878-XiMat	blood
7	chr10:97456400-97458600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr10:97456600-97458400	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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