Variant report

Variant	rs557762783
Chromosome Location	chr9:21183395-21183396
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BATF	chr9:21183393-21183622	GM12878	blood:	n/a	n/a
2	RAD21	chr9:21183059-21183442	HepG2	liver:	n/a	n/a
3	SPI1	chr9:21183391-21183731	GM12891	blood:	n/a	chr9:21183603-21183610 chr9:21183597-21183604
4	CTCF	chr9:21183260-21183410	GM12872	blood:	n/a	n/a
5	IRF4	chr9:21183282-21183789	GM12878	blood:	n/a	n/a
6	CTCF	chr9:21183320-21183470	HMEC	breast:	n/a	n/a
7	IRF4	chr9:21183395-21183808	GM12878	blood:	n/a	n/a
8	CTCF	chr9:21183300-21183450	NHDF-neo	bronchial:	n/a	n/a
9	CTCF	chr9:21183300-21183450	HAc	cerebellar:	n/a	n/a
10	CTCF	chr9:21183160-21183450	HCT-116	colon:	n/a	chr9:21183259-21183277
11	CTCF	chr9:21183020-21183468	HCT-116	colon:	n/a	chr9:21183259-21183277
12	ZNF143	chr9:21183118-21183405	GM12878	blood:	n/a	n/a
13	CTCF	chr9:21183300-21183450	RPTEC	kidney:	n/a	n/a
14	CTCF	chr9:21183300-21183450	HRPEpiC	eye:	n/a	n/a
15	RAD21	chr9:21183106-21183414	H1-hESC	embryonic stem cell:	n/a	n/a
16	CTCF	chr9:21183320-21183470	BE2_C	brain:	n/a	n/a
17	RAD21	chr9:21183017-21183515	HCT-116	colon:	n/a	n/a
18	BATF	chr9:21183391-21183669	GM12878	blood:	n/a	n/a
19	CTCF	chr9:21183280-21183430	AG09319	gingival:	n/a	n/a
20	CTCF	chr9:21183113-21183398	MCF-7	breast:	n/a	chr9:21183259-21183277
21	CTCF	chr9:21183003-21183490	A549	lung:	n/a	chr9:21183259-21183277
22	CTCF	chr9:21183094-21183406	A549	lung:	n/a	chr9:21183259-21183277
23	FOXM1	chr9:21183036-21183618	GM12878	blood:	n/a	n/a
24	CTCF	chr9:21183098-21183455	GM12878	blood:	n/a	chr9:21183259-21183277
25	CTCF	chr9:21183280-21183430	NHLF	lung:	n/a	n/a
26	CTCF	chr9:21182901-21183479	A549	lung:	n/a	chr9:21183259-21183277
27	CTCF	chr9:21183007-21183597	SK-N-SH	brain:	n/a	chr9:21183259-21183277
28	CTCF	chr9:21183280-21183430	GM06990	blood:	n/a	n/a
29	CTCF	chr9:21183280-21183430	HFF	foreskin:	n/a	n/a
30	CTCF	chr9:21183320-21183470	HCM	heart:	n/a	n/a
31	CTCF	chr9:21183125-21183417	HUVEC	blood vessel:	n/a	chr9:21183259-21183277
32	RAD21	chr9:21183007-21183429	H1-hESC	embryonic stem cell:	n/a	n/a
33	CTCF	chr9:21183300-21183450	BE2_C	brain:	n/a	n/a
34	CTCF	chr9:21183118-21183399	IMR90	lung:	n/a	chr9:21183259-21183277
35	CTCF	chr9:21183110-21183413	GM12878	blood:	n/a	chr9:21183259-21183277
36	CTCF	chr9:21183340-21183490	HAc	cerebellar:	n/a	n/a
37	CTCF	chr9:21183162-21183398	H1-hESC	embryonic stem cell:	n/a	chr9:21183259-21183277
38	CTCF	chr9:21183300-21183450	HCM	heart:	n/a	n/a
39	RAD21	chr9:21183096-21183446	H1-hESC	embryonic stem cell:	n/a	n/a
40	CTCF	chr9:21183119-21183404	GM13977	blood:	n/a	chr9:21183259-21183277
41	POU2F2	chr9:21183394-21183726	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
IFNWP15	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817218	chr9:20687769-21309177	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
3	nsv466293	chr9:21029330-21199680	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv613752	chr9:21029330-21199680	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1032466	chr9:21052069-21243756	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv540084	chr9:21052069-21243756	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv892734	chr9:21108817-21323089	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv892735	chr9:21157373-21242161	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv968599	chr9:21166047-21239960	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv613755	chr9:21170364-21216028	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv1016978	chr9:21171267-21214877	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv1022579	chr9:21178517-21228248	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
13	esv2757324	chr9:21181454-21196515	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
14	esv2759678	chr9:21181454-21196515	Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv1018561	chr9:21181454-21228248	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
16	esv3325686	chr9:21182087-21194435	Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21182800-21184000	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr9:21183000-21183400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr9:21183000-21183400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr9:21183200-21184000	Enhancers	Primary monocytes fromperipheralblood	blood

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