Variant report

Variant	rs55777905
Chromosome Location	chr2:190928284-190928285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1987296	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5743205	1.00[AMR][1000 genomes]
rs59937732	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60490864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7599727	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3439178	chr2:190877215-191124499	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190926200-190928400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr2:190927000-190928800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:190927600-190928400	Weak transcription	Brain Hippocampus Middle	brain
4	chr2:190927600-190934800	Weak transcription	Fetal Muscle Leg	muscle
5	chr2:190927800-190928400	Weak transcription	Brain Germinal Matrix	brain
6	chr2:190928200-190928400	Enhancers	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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