Variant report

Variant	rs55786650
Chromosome Location	chr5:36868104-36868105
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:36857086..36859417-chr5:36866349..36868294,2	K562	blood:
2	chr5:36862319..36866798-chr5:36867132..36872368,6	K562	blood:
3	chr5:36753234..36755595-chr5:36867816..36869786,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C5orf42-2	chr5:36867686-36876860	NONHSAT101045

Variant related genes	Relation type
ENSG00000272103	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10041439	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10044651	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10053695	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10056607	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10223124	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11956853	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1389861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs150537	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs159750	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs159754	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs159911	1.00[AMR][1000 genomes]
rs159912	1.00[AMR][1000 genomes]
rs28408500	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs294690	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs294691	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs294692	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs294693	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs294696	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs294698	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs297538	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs298970	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs300047	1.00[AMR][1000 genomes]
rs300048	1.00[AMR][1000 genomes]
rs300056	1.00[AMR][1000 genomes]
rs300057	1.00[AMR][1000 genomes]
rs300059	1.00[AMR][1000 genomes]
rs301858	1.00[AMR][1000 genomes]
rs301900	1.00[AMR][1000 genomes]
rs391366	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs463041	1.00[AMR][1000 genomes]
rs59774526	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6863784	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750906	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750908	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7702256	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7724311	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7735990	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9292646	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9764719	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv525478	chr5:36804225-37349895	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv532133	chr5:36834932-36906436	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
4	esv1793961	chr5:36866835-37361728	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36862400-36874000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr5:36862600-36873600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:36862600-36874800	Weak transcription	Aorta	Aorta
4	chr5:36862800-36873800	Weak transcription	NH-A	brain
5	chr5:36863000-36874800	Weak transcription	Left Ventricle	heart
6	chr5:36864000-36873400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:36864400-36873200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:36864600-36871600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr5:36864600-36874000	Weak transcription	Fetal Stomach	stomach
10	chr5:36864600-36874000	Weak transcription	Thymus	Thymus
11	chr5:36864800-36873600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr5:36864800-36874000	Weak transcription	Fetal Intestine Small	intestine
13	chr5:36864800-36874800	Weak transcription	Placenta	Placenta
14	chr5:36865400-36871400	Weak transcription	Fetal Brain Female	brain
15	chr5:36865800-36873400	Weak transcription	NHDF-Ad	bronchial
16	chr5:36866200-36873600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr5:36866200-36874000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:36866600-36870200	Weak transcription	Primary T cells from cord blood	blood
19	chr5:36866600-36871600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr5:36867400-36869400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:36867400-36875200	Weak transcription	Lung	lung
22	chr5:36867800-36870400	Weak transcription	Dnd41	blood
23	chr5:36868000-36870400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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