Variant report

Variant	rs10044651
Chromosome Location	chr5:36945136-36945137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:36875293..36878744-chr5:36944693..36947433,6	MCF-7	breast:
2	chr5:36945026..36947869-chr5:36950785..36953502,2	K562	blood:
3	chr5:36739462..36740370-chr5:36944609..36945180,2	K562	blood:
4	chr5:36935171..36938055-chr5:36942349..36945199,2	MCF-7	breast:
5	chr5:36877079..36878828-chr5:36943978..36945931,2	MCF-7	breast:
6	chr5:36943731..36946422-chr5:36953381..36955918,2	MCF-7	breast:
7	chr5:36876438..36878732-chr5:36943476..36946469,3	K562	blood:
8	chr5:36943349..36945887-chr5:36955686..36957216,2	K562	blood:
9	chr5:36744407..36745358-chr5:36944478..36945301,2	MCF-7	breast:
10	chr5:36876324..36878732-chr5:36943861..36946469,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000164190	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10041439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10053695	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10056607	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10223124	0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11956853	0.94[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1389861	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs150537	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs159750	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs159754	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs159911	1.00[AMR][1000 genomes]
rs159912	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28408500	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs294690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs294691	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs294692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs294693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs294696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs294698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs297538	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs298970	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs300047	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs300048	1.00[AMR][1000 genomes]
rs300056	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs300057	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs300059	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs301858	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs301900	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs391366	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs463041	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55786650	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59774526	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6863784	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750906	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750908	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7702256	0.94[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7724311	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7735990	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9292646	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9764719	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv525478	chr5:36804225-37349895	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	esv1793961	chr5:36866835-37361728	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv530225	chr5:36886635-37331912	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1024051	chr5:36899712-37303001	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv537725	chr5:36899712-37303001	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv530226	chr5:36906377-37606367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
8	nsv1033562	chr5:36927652-36994811	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1023362	chr5:36927652-37010749	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
10	nsv1017947	chr5:36927652-37017180	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
11	nsv1029936	chr5:36927652-37025871	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
12	nsv1029319	chr5:36928654-37017180	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
13	nsv1030883	chr5:36932448-37039857	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
14	esv1803659	chr5:36935129-37039857	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36919800-36953000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr5:36919800-36961600	Weak transcription	K562	blood
3	chr5:36920400-36951400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:36924800-36955200	Weak transcription	Dnd41	blood
5	chr5:36927600-36961600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr5:36929600-36947400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:36933200-36962000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:36933400-36949600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:36935200-36947200	Weak transcription	Primary T cells from cord blood	blood
10	chr5:36936000-36951600	Weak transcription	Primary B cells from cord blood	blood
11	chr5:36936800-36951000	Weak transcription	Right Ventricle	heart
12	chr5:36938000-36945400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr5:36938000-36949200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr5:36938200-36945800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:36938200-36948200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr5:36938400-36946200	Weak transcription	Left Ventricle	heart
17	chr5:36939000-36945600	Weak transcription	Liver	Liver
18	chr5:36939200-36950800	Weak transcription	Ovary	ovary
19	chr5:36939400-36950800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr5:36939600-36950800	Weak transcription	Adipose Nuclei	Adipose
21	chr5:36939600-36954200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr5:36939600-36955400	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr5:36940200-36946200	Weak transcription	Osteobl	bone
24	chr5:36940200-36950800	Weak transcription	Hela-S3	cervix
25	chr5:36940200-36955600	Weak transcription	Fetal Thymus	thymus
26	chr5:36940400-36950600	Weak transcription	HepG2	liver
27	chr5:36940600-36948400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr5:36940600-36949400	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr5:36940600-36956000	Weak transcription	Fetal Intestine Small	intestine
30	chr5:36940600-36985400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr5:36940800-36945600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr5:36940800-36948200	Weak transcription	HSMM	muscle
33	chr5:36940800-36950400	Weak transcription	Fetal Intestine Large	intestine
34	chr5:36940800-36956600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr5:36941000-36946000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr5:36941200-36946000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr5:36941200-36947000	Weak transcription	A549	lung
38	chr5:36941200-36947600	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr5:36941200-36950600	Weak transcription	GM12878-XiMat	blood
40	chr5:36941800-36946800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr5:36943600-36947400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr5:36944200-36945400	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr5:36944200-36950800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr5:36944200-36957200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr5:36944400-36945600	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr5:36944400-36945600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr5:36944400-36946200	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr5:36944400-36946200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr5:36944400-36946200	Weak transcription	NHDF-Ad	bronchial
50	chr5:36944400-36950400	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links