Variant report

Variant	rs9764719
Chromosome Location	chr5:36929603-36929604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36927710..36929639-chr5:36961627..36963604,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10041439	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10044651	0.89[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10053695	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10056607	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10223124	0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11956853	0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1389861	0.89[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs150537	0.89[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs159750	0.88[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs159754	0.88[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs159911	1.00[AMR][1000 genomes]
rs159912	1.00[AMR][1000 genomes]
rs28408500	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs294690	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs294691	0.88[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs294692	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs294693	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs294696	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs294698	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs297538	0.89[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs298970	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs300047	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs300048	1.00[AMR][1000 genomes]
rs300056	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs300057	1.00[AMR][1000 genomes]
rs300059	1.00[AMR][1000 genomes]
rs301858	1.00[AMR][1000 genomes]
rs301900	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs391366	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs463041	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs55786650	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59774526	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6863784	0.88[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750906	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73750908	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7702256	0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7724311	0.88[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7735990	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9292646	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv525478	chr5:36804225-37349895	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	esv1793961	chr5:36866835-37361728	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv530225	chr5:36886635-37331912	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv830264	chr5:36887002-36941494	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1024051	chr5:36899712-37303001	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv537725	chr5:36899712-37303001	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv530226	chr5:36906377-37606367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
9	nsv1033562	chr5:36927652-36994811	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1023362	chr5:36927652-37010749	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
11	nsv1017947	chr5:36927652-37017180	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
12	nsv1029936	chr5:36927652-37025871	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
13	nsv1029319	chr5:36928654-37017180	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36907400-36938200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:36913800-36931400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr5:36919600-36931400	Weak transcription	Left Ventricle	heart
4	chr5:36919600-36938200	Weak transcription	Pancreas	Pancrea
5	chr5:36919800-36953000	Weak transcription	Primary B cells from peripheral blood	blood
6	chr5:36919800-36961600	Weak transcription	K562	blood
7	chr5:36920400-36951400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr5:36921600-36931600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:36923400-36931400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr5:36923600-36943600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr5:36924600-36943600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:36924800-36931000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr5:36924800-36933000	Weak transcription	Aorta	Aorta
14	chr5:36924800-36939000	Weak transcription	Fetal Thymus	thymus
15	chr5:36924800-36955200	Weak transcription	Dnd41	blood
16	chr5:36925400-36933800	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr5:36925600-36935200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr5:36926000-36936800	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr5:36926600-36931600	Weak transcription	GM12878-XiMat	blood
20	chr5:36926600-36939400	Weak transcription	Fetal Intestine Small	intestine
21	chr5:36926800-36934200	Weak transcription	Colon Smooth Muscle	Colon
22	chr5:36927600-36929800	Enhancers	NHDF-Ad	bronchial
23	chr5:36927600-36961600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr5:36928000-36929800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr5:36928200-36929800	Enhancers	Osteobl	bone
26	chr5:36928200-36930200	Enhancers	HUVEC	blood vessel
27	chr5:36928200-36930800	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr5:36928200-36931200	Enhancers	Hela-S3	cervix
29	chr5:36928200-36931400	Weak transcription	Psoas Muscle	Psoas
30	chr5:36928200-36935200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr5:36928200-36935400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr5:36928400-36930200	Enhancers	Muscle Satellite Cultured Cells	--
33	chr5:36928400-36931400	Weak transcription	Ovary	ovary
34	chr5:36928600-36929800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr5:36928600-36929800	Enhancers	HMEC	breast
36	chr5:36928600-36929800	Enhancers	HSMM	muscle
37	chr5:36928600-36929800	Enhancers	NH-A	brain
38	chr5:36928600-36930000	Enhancers	NHEK	skin
39	chr5:36928600-36930800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr5:36928600-36931200	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr5:36928800-36929800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr5:36928800-36930600	Enhancers	Primary T cells from cord blood	blood
43	chr5:36928800-36933800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr5:36929000-36930000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr5:36929000-36930000	Enhancers	Pancreatic Islets	Pancreatic Islet
46	chr5:36929000-36930200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr5:36929000-36934800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr5:36929000-36938000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr5:36929200-36930000	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr5:36929200-36930200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links