Variant report

Variant	rs55792576
Chromosome Location	chr14:68929283-68929284
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68927281..68930277-chr14:68947615..68950464,3	MCF-7	breast:
2	chr14:68605260..68609256-chr14:68928539..68930539,3	MCF-7	breast:
3	chr14:68918630..68920344-chr14:68927220..68929899,2	MCF-7	breast:
4	chr14:68928235..68931099-chr14:69252310..69254184,2	MCF-7	breast:
5	chr14:68924822..68938526-chr14:69257377..69265713,29	MCF-7	breast:
6	chr14:68927072..68929537-chr14:68988559..68991128,2	MCF-7	breast:
7	chr14:68917247..68930048-chr14:69249444..69264210,56	MCF-7	breast:
8	chr14:68928799..68930432-chr14:68953133..68955101,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17828548	1.00[ASN][1000 genomes]
rs2025010	1.00[ASN][1000 genomes]
rs55794864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55820001	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55905601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs729138	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68922200-68937600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr14:68924600-68931200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr14:68924800-68929800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr14:68924800-68936000	Enhancers	HSMM	muscle
5	chr14:68925000-68935200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr14:68925600-68929400	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr14:68926000-68933000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr14:68926000-68935000	Weak transcription	Fetal Thymus	thymus
9	chr14:68926000-68935200	Weak transcription	Gastric	stomach
10	chr14:68926200-68931600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr14:68926200-68931600	Weak transcription	Placenta	Placenta
12	chr14:68926200-68931600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr14:68926200-68933000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr14:68926200-68933200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr14:68926200-68935000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr14:68926200-68940000	Weak transcription	Ovary	ovary
17	chr14:68926400-68931000	Weak transcription	NHDF-Ad	bronchial
18	chr14:68926400-68931200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr14:68926400-68931200	Weak transcription	NH-A	brain
20	chr14:68926400-68931200	Weak transcription	NHLF	lung
21	chr14:68926400-68931400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr14:68926400-68933000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr14:68926400-68933200	Enhancers	HSMMtube	muscle
24	chr14:68926400-68933400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr14:68926600-68929800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr14:68926600-68930400	Weak transcription	Liver	Liver
27	chr14:68926600-68931600	Enhancers	A549	lung
28	chr14:68926600-68933200	Weak transcription	Fetal Stomach	stomach
29	chr14:68926600-68935600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr14:68926800-68929400	Weak transcription	HMEC	breast
31	chr14:68926800-68930400	Weak transcription	HepG2	liver
32	chr14:68926800-68933200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr14:68926800-68933200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr14:68926800-68933200	Weak transcription	Fetal Intestine Small	intestine
35	chr14:68926800-68937600	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr14:68927000-68936600	Weak transcription	Primary B cells from cord blood	blood
37	chr14:68927400-68930400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr14:68927400-68931200	Weak transcription	Osteobl	bone
39	chr14:68927400-68933000	Weak transcription	Lung	lung
40	chr14:68927400-68933200	Weak transcription	Spleen	Spleen
41	chr14:68927400-68935000	Weak transcription	Esophagus	oesophagus
42	chr14:68927600-68929600	Weak transcription	Hela-S3	cervix
43	chr14:68927600-68931200	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr14:68927600-68931600	Weak transcription	Pancreas	Pancrea
45	chr14:68927600-68933000	Weak transcription	Fetal Lung	lung
46	chr14:68927600-68933000	Weak transcription	Left Ventricle	heart
47	chr14:68927600-68933000	Weak transcription	Stomach Mucosa	stomach
48	chr14:68927600-68933200	Weak transcription	Right Atrium	heart
49	chr14:68927600-68943800	Weak transcription	Fetal Muscle Trunk	muscle
50	chr14:68927800-68931200	Weak transcription	Primary monocytes fromperipheralblood	blood

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