Variant report

Variant	rs55820001
Chromosome Location	chr14:68907848-68907849
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68607279..68608954-chr14:68906773..68909021,2	MCF-7	breast:
2	chr14:68905969..68908035-chr14:68908553..68911248,2	MCF-7	breast:
3	chr14:68863198..68864811-chr14:68906969..68909048,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17828548	1.00[ASN][1000 genomes]
rs2025010	1.00[ASN][1000 genomes]
rs55792576	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55794864	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55905601	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs729138	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68895200-68914400	Weak transcription	A549	lung
2	chr14:68901400-68908600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr14:68903000-68911200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr14:68904000-68910000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:68906200-68911200	Weak transcription	Spleen	Spleen
6	chr14:68906200-68911400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr14:68906200-68912200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr14:68906400-68911400	Weak transcription	Fetal Lung	lung
9	chr14:68906400-68912000	Enhancers	NHDF-Ad	bronchial
10	chr14:68906600-68908600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr14:68906600-68909600	Weak transcription	Psoas Muscle	Psoas
12	chr14:68906800-68908600	Weak transcription	Fetal Muscle Leg	muscle
13	chr14:68906800-68911200	Weak transcription	Right Atrium	heart
14	chr14:68906800-68916000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr14:68907000-68908600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr14:68907000-68909600	Weak transcription	Adipose Nuclei	Adipose
17	chr14:68907000-68911200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr14:68907200-68908400	Weak transcription	Colon Smooth Muscle	Colon
19	chr14:68907200-68911200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr14:68907400-68908000	Enhancers	Liver	Liver
21	chr14:68907400-68909800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr14:68907600-68908800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr14:68907800-68908000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr14:68907800-68908600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr14:68907800-68908600	Weak transcription	Osteobl	bone
26	chr14:68907800-68909600	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr14:68907800-68911200	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links