Variant report

Variant	rs55905601
Chromosome Location	chr14:68912782-68912783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68887949..68890328-chr14:68911065..68913436,2	MCF-7	breast:
2	chr14:68848862..68851704-chr14:68911488..68914021,2	MCF-7	breast:
3	chr14:68911957..68914084-chr14:69032259..69034812,2	MCF-7	breast:
4	chr14:68771399..68773960-chr14:68910018..68913627,3	MCF-7	breast:
5	chr14:68910903..68913112-chr14:69019388..69021979,2	MCF-7	breast:
6	chr14:68912559..68915110-chr14:68915133..68917933,3	MCF-7	breast:
7	chr14:68911921..68914411-chr14:69260879..69263149,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258477	Chromatin interaction
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55792576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55794864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55820001	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68895200-68914400	Weak transcription	A549	lung
2	chr14:68906800-68916000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr14:68908000-68913000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr14:68908600-68917400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr14:68909000-68916200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr14:68909600-68912800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:68909600-68915000	Enhancers	Dnd41	blood
8	chr14:68911400-68915000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr14:68911600-68913400	Weak transcription	Placenta	Placenta
10	chr14:68911600-68914800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr14:68911600-68914800	Weak transcription	Small Intestine	intestine
12	chr14:68911800-68912800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:68911800-68913600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr14:68911800-68914000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr14:68911800-68916200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr14:68911800-68916200	Weak transcription	Brain Anterior Caudate	brain
17	chr14:68911800-68916200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr14:68911800-68916200	Weak transcription	NH-A	brain
19	chr14:68911800-68917200	Weak transcription	Right Atrium	heart
20	chr14:68911800-68917600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr14:68911800-68921200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr14:68912000-68913000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr14:68912000-68913000	Weak transcription	Thymus	Thymus
24	chr14:68912000-68913000	Weak transcription	NHEK	skin
25	chr14:68912000-68913400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr14:68912000-68913600	Weak transcription	Liver	Liver
27	chr14:68912000-68913800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr14:68912000-68914400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr14:68912000-68914400	Weak transcription	Fetal Stomach	stomach
30	chr14:68912000-68914600	Weak transcription	Fetal Muscle Leg	muscle
31	chr14:68912000-68914800	Weak transcription	Stomach Mucosa	stomach
32	chr14:68912000-68914800	Weak transcription	NHLF	lung
33	chr14:68912000-68915000	Weak transcription	Pancreas	Pancrea
34	chr14:68912000-68916000	Weak transcription	Fetal Thymus	thymus
35	chr14:68912000-68916000	Weak transcription	NHDF-Ad	bronchial
36	chr14:68912000-68916200	Weak transcription	Brain Hippocampus Middle	brain
37	chr14:68912000-68916200	Weak transcription	Ovary	ovary
38	chr14:68912000-68916200	Weak transcription	HMEC	breast
39	chr14:68912000-68916800	Weak transcription	Brain Germinal Matrix	brain
40	chr14:68912000-68917600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr14:68912000-68917600	Weak transcription	Left Ventricle	heart
42	chr14:68912000-68917600	Weak transcription	Psoas Muscle	Psoas
43	chr14:68912200-68912800	Weak transcription	Stomach Smooth Muscle	stomach
44	chr14:68912200-68914600	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr14:68912200-68914600	Weak transcription	Fetal Lung	lung
46	chr14:68912200-68915400	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr14:68912200-68916000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr14:68912200-68916000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr14:68912200-68916200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr14:68912200-68916200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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