Variant report

Variant	rs55798477
Chromosome Location	chr2:113599527-113599528
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CREB1	chr2:113598772-113599860	GM12878	blood:	n/a	n/a
2	SPI1	chr2:113599422-113599709	GM12878	blood:	n/a	chr2:113599576-113599589 chr2:113599575-113599588 chr2:113599578-113599587
3	EP300	chr2:113598951-113599668	GM12878	blood:	n/a	chr2:113599107-113599121
4	SPI1	chr2:113599284-113599710	GM12891	blood:	n/a	chr2:113599576-113599589 chr2:113599575-113599588 chr2:113599578-113599587
5	SPI1	chr2:113599349-113599766	HL-60	blood:	n/a	chr2:113599576-113599589 chr2:113599575-113599588 chr2:113599578-113599587
6	NFIC	chr2:113598739-113599788	GM12878	blood:	n/a	n/a
7	FOS	chr2:113599264-113599532	MCF10A-Er-Src	breast:	n/a	n/a
8	SPI1	chr2:113598875-113599745	GM12878	blood:	n/a	chr2:113599576-113599589 chr2:113599575-113599588 chr2:113599578-113599587 chr2:113599110-113599123
9	STAT3	chr2:113599278-113599535	MCF10A-Er-Src	breast:	n/a	n/a
10	RELA	chr2:113598849-113599601	GM12891	blood:	n/a	chr2:113599078-113599087 chr2:113599078-113599087
11	BHLHE40	chr2:113598873-113599651	GM12878	blood:	n/a	n/a
12	EBF1	chr2:113599501-113599620	GM12878	blood:	n/a	n/a
13	RELA	chr2:113598865-113599646	GM19099	blood:	n/a	chr2:113599078-113599087 chr2:113599078-113599087
14	SPI1	chr2:113599285-113599754	GM12891	blood:	n/a	chr2:113599576-113599589 chr2:113599575-113599588 chr2:113599578-113599587
15	PML	chr2:113598694-113599711	GM12878	blood:	n/a	n/a
16	EP300	chr2:113598865-113599765	GM12878	blood:	n/a	chr2:113599107-113599121 chr2:113599681-113599694
17	CEBPB	chr2:113599202-113599552	K562	blood:	n/a	chr2:113599364-113599375
18	MTA3	chr2:113598705-113599783	GM12878	blood:	n/a	n/a
19	FOXM1	chr2:113598841-113599637	GM12878	blood:	n/a	n/a
20	SPI1	chr2:113599466-113599678	K562	blood:	n/a	chr2:113599576-113599589 chr2:113599575-113599588 chr2:113599578-113599587
21	RELA	chr2:113598789-113599692	GM12878	blood:	n/a	chr2:113599078-113599087 chr2:113599078-113599087
22	SPI1	chr2:113598727-113600040	GM12878	blood:	n/a	chr2:113599576-113599589 chr2:113599575-113599588 chr2:113599578-113599587 chr2:113599110-113599123
23	CEBPB	chr2:113599210-113599529	HepG2	liver:	n/a	chr2:113599364-113599375
24	MTA3	chr2:113598802-113599715	GM12878	blood:	n/a	n/a
25	NFIC	chr2:113598834-113599638	GM12878	blood:	n/a	n/a
26	ATF2	chr2:113598750-113599664	GM12878	blood:	n/a	n/a
27	SPI1	chr2:113598883-113599858	HL-60	blood:	n/a	chr2:113599576-113599589 chr2:113599575-113599588 chr2:113599578-113599587 chr2:113599110-113599123
28	RUNX3	chr2:113598768-113599584	GM12878	blood:	n/a	n/a
29	CEBPB	chr2:113599200-113599551	IMR90	lung:	n/a	chr2:113599364-113599375
30	BCL11A	chr2:113599391-113599629	GM12878	blood:	n/a	n/a
31	PAX5	chr2:113599411-113599633	GM12878	blood:	n/a	n/a
32	CEBPB	chr2:113599212-113599558	A549	lung:	n/a	chr2:113599364-113599375

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:113589535..113594443-chr2:113597235..113600189,5	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IL37-4	chr2:113597905-113601772	NONHSAT073731

Variant related genes	Relation type
ENSG00000221541	TF binding region
ENSG00000125538	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11674397	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11681359	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4257410	0.84[EUR][1000 genomes]
rs4334503	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4458215	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55953396	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7563305	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7581834	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113591200-113600200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:113594400-113600200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr2:113594400-113601200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr2:113595000-113600200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr2:113596000-113600800	Enhancers	Primary B cells from peripheral blood	blood
6	chr2:113597400-113600600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr2:113598000-113600000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:113598200-113600000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:113598200-113600000	Weak transcription	HMEC	breast
10	chr2:113598200-113600600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr2:113598200-113603400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:113598800-113599600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr2:113599200-113599600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:113599400-113599600	Flanking Active TSS	Primary B cells from cord blood	blood
15	chr2:113599400-113599600	Flanking Active TSS	Primary hematopoietic stem cells	blood
16	chr2:113599400-113600600	Enhancers	NHEK	skin
17	chr2:113599400-113600800	Enhancers	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links