Variant report

Variant	rs4257410
Chromosome Location	chr2:113674155-113674156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:113671840..113673562-chr2:113673585..113676227,2	K562	blood:

Variant related genes	Relation type
ENSG00000125571	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11674397	0.90[EUR][1000 genomes]
rs11676969	0.90[EUR][1000 genomes]
rs11677903	0.83[EUR][1000 genomes]
rs11680584	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11680975	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11681359	0.90[EUR][1000 genomes]
rs11683669	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11685418	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11689621	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11692391	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11692429	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11694258	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11694657	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11694863	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11696002	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17042591	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3923566	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4074747	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4334503	0.90[EUR][1000 genomes]
rs4458215	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4591347	0.97[ASN][1000 genomes]
rs4592853	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55798477	0.84[EUR][1000 genomes]
rs55953396	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56319258	0.94[ASN][1000 genomes]
rs59995729	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7563305	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7581834	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7597623	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7600475	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7602576	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv961338	chr2:113657963-113691422	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1003372	chr2:113670890-113682621	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113664800-113678000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr2:113671600-113674400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:113671600-113674800	Enhancers	Primary T cells fromperipheralblood	blood
4	chr2:113671600-113683000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:113671800-113674600	Enhancers	Fetal Thymus	thymus
6	chr2:113671800-113675000	Enhancers	Thymus	Thymus
7	chr2:113672000-113674200	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr2:113672000-113674600	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr2:113672200-113674200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr2:113672400-113674200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr2:113672600-113677800	Enhancers	Fetal Intestine Small	intestine
12	chr2:113672800-113677600	Enhancers	Fetal Intestine Large	intestine
13	chr2:113673000-113674200	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr2:113674000-113674400	Flanking Active TSS	GM12878-XiMat	blood

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