Variant report

Variant	rs7602576
Chromosome Location	chr2:113699617-113699618
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:113642230..113643259-chr2:113698990..113700080,4	MCF-7	breast:
2	chr2:113699183..113701055-chr2:113704655..113706324,2	MCF-7	breast:
3	chr2:113506923..113507895-chr2:113698818..113699884,5	MCF-7	breast:
4	chr2:113506982..113507851-chr2:113699030..113699972,2	K562	blood:
5	chr2:113507087..113507745-chr2:113699452..113699992,2	MCF-7	breast:
6	chr2:113649179..113649918-chr2:113699043..113699938,2	MCF-7	breast:
7	chr2:113357284..113358273-chr2:113699007..113699673,4	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11674397	0.82[EUR][1000 genomes]
rs11676969	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11677903	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11680584	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11680975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11681359	0.82[EUR][1000 genomes]
rs11683669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11685418	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11689621	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11692391	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11692429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11694258	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11694657	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11694863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11696002	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13415097	0.82[ASN][1000 genomes]
rs17042591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17607787	1.00[JPT][hapmap]
rs17659543	0.82[ASN][1000 genomes]
rs28938790	1.00[JPT][hapmap]
rs3923566	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4074747	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4257410	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4334503	0.82[EUR][1000 genomes]
rs4458215	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4592853	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55953396	0.84[EUR][1000 genomes]
rs59995729	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7563305	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7581834	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7597623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7600475	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv979388	chr2:113696105-113705504	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113697000-113699800	Enhancers	Liver	Liver
2	chr2:113697600-113700400	Enhancers	Colon Smooth Muscle	Colon
3	chr2:113698200-113699800	Enhancers	Rectal Smooth Muscle	rectum
4	chr2:113698200-113700000	Enhancers	Stomach Mucosa	stomach
5	chr2:113699000-113699800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr2:113699000-113700800	Enhancers	NHEK	skin
7	chr2:113699000-113701000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:113699200-113700000	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr2:113699200-113700600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:113699200-113700600	Enhancers	HMEC	breast
11	chr2:113699400-113699800	Enhancers	Primary T cells fromperipheralblood	blood
12	chr2:113699400-113700400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:113699400-113700400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr2:113699600-113700400	Enhancers	Fetal Intestine Small	intestine
15	chr2:113699600-113700400	Enhancers	Gastric	stomach
16	chr2:113699600-113700600	Enhancers	HepG2	liver

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