Variant report

Variant	rs4074747
Chromosome Location	chr2:113696346-113696347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:113694655..113699559-chr2:113699730..113703257,4	MCF-7	breast:
2	chr2:113695165..113698377-chr2:113699884..113701948,3	K562	blood:
3	chr2:113695796..113697897-chr2:113704279..113705804,2	K562	blood:
4	chr2:113672670..113675294-chr2:113694473..113696663,3	K562	blood:

Variant related genes	Relation type
ENSG00000125571	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11674397	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11676969	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11677903	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11680584	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11680975	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11681359	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11683669	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11685418	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11689621	0.94[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11692391	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11692429	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11694258	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11694657	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11694863	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11696002	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17042591	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2708925	0.84[JPT][hapmap]
rs2708933	0.88[ASN][1000 genomes]
rs2708934	0.84[CHB][hapmap]
rs2723164	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs2723176	0.85[CHB][hapmap]
rs2723186	0.85[CHB][hapmap]
rs2723196	0.84[JPT][hapmap]
rs3811046	0.86[CHB][hapmap]
rs3811047	0.86[CHB][hapmap]
rs3923566	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4257410	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4334503	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4458215	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4592853	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55953396	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59995729	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7559606	0.84[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs7563305	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7564181	0.98[ASN][1000 genomes]
rs7581834	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7597623	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7600475	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7602576	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv979388	chr2:113696105-113705504	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113694000-113699200	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr2:113694200-113696600	Weak transcription	NH-A	brain
3	chr2:113695800-113697600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr2:113696000-113696800	Enhancers	Gastric	stomach
5	chr2:113696000-113697400	Enhancers	HMEC	breast
6	chr2:113696200-113696800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr2:113696200-113697000	Flanking Active TSS	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links