Variant report

Variant	rs11676969
Chromosome Location	chr2:113696838-113696839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:113694655..113699559-chr2:113699730..113703257,4	MCF-7	breast:
2	chr2:113695165..113698377-chr2:113699884..113701948,3	K562	blood:
3	chr2:113695796..113697897-chr2:113704279..113705804,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11674397	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11677903	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11680584	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11680975	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11681359	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11683669	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11685418	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11689621	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11692391	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11692429	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11694258	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11694657	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11694863	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11696002	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13415097	0.82[ASN][1000 genomes]
rs17042591	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17659543	0.82[ASN][1000 genomes]
rs3923566	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4074747	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4257410	0.90[EUR][1000 genomes]
rs4334503	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4458215	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4592853	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55953396	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59995729	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7563305	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7581834	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7597623	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7600475	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7602576	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv979388	chr2:113696105-113705504	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113694000-113699200	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr2:113695800-113697600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr2:113696000-113697400	Enhancers	HMEC	breast
4	chr2:113696200-113697000	Flanking Active TSS	Liver	Liver
5	chr2:113696400-113697200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr2:113696400-113697600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr2:113696600-113697000	Enhancers	NH-A	brain
8	chr2:113696600-113697000	Enhancers	NHEK	skin
9	chr2:113696600-113697000	Enhancers	Osteobl	bone
10	chr2:113696600-113697200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr2:113696600-113697400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:113696600-113697400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:113696800-113697200	Weak transcription	Gastric	stomach
14	chr2:113696800-113697400	Bivalent Enhancer	HepG2	liver

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