Variant report

Variant	rs2708933
Chromosome Location	chr2:113689951-113689952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11676778	0.85[EUR][1000 genomes]
rs11683079	0.85[EUR][1000 genomes]
rs11687740	0.85[EUR][1000 genomes]
rs13023984	0.83[AFR][1000 genomes]
rs2464908	0.82[AFR][1000 genomes]
rs2464909	0.84[AFR][1000 genomes]
rs2464910	0.84[AFR][1000 genomes]
rs2708925	0.82[AFR][1000 genomes]
rs2708935	0.84[AFR][1000 genomes]
rs2708936	0.84[AFR][1000 genomes]
rs2723195	0.80[ASN][1000 genomes]
rs2723196	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2723198	0.84[AFR][1000 genomes]
rs2723199	0.84[AFR][1000 genomes]
rs2723200	0.84[AFR][1000 genomes]
rs2723201	0.84[AFR][1000 genomes]
rs2723202	0.84[AFR][1000 genomes]
rs2723203	0.84[AFR][1000 genomes]
rs3811045	0.85[EUR][1000 genomes]
rs3811046	0.85[EUR][1000 genomes]
rs3811047	0.84[EUR][1000 genomes]
rs3811048	0.83[EUR][1000 genomes]
rs4074747	0.88[ASN][1000 genomes]
rs4241122	0.85[EUR][1000 genomes]
rs4289204	0.85[EUR][1000 genomes]
rs4589758	0.82[AFR][1000 genomes]
rs4849133	0.82[AFR][1000 genomes]
rs6717710	0.85[EUR][1000 genomes]
rs6725910	0.82[AFR][1000 genomes]
rs6736642	0.80[AFR][1000 genomes]
rs6751093	0.84[AFR][1000 genomes]
rs7564181	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7577574	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv961338	chr2:113657963-113691422	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113686000-113690600	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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