Variant report

Variant	rs2723195
Chromosome Location	chr2:113690452-113690453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IL37-3	chr2:113690202-113690748	NONHSAT073735

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10174484	1.00[MEX][hapmap]
rs13023868	0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs13023984	0.86[ASN][1000 genomes]
rs17042569	1.00[AMR][1000 genomes]
rs2464908	0.95[ASN][1000 genomes]
rs2464909	0.95[ASN][1000 genomes]
rs2464910	0.95[ASN][1000 genomes]
rs2466449	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2708918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2708922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2708923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2708925	0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2708926	0.95[ASN][1000 genomes]
rs2708933	0.80[ASN][1000 genomes]
rs2708934	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2708935	0.95[ASN][1000 genomes]
rs2708936	0.95[ASN][1000 genomes]
rs2708972	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2708973	1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2723153	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2723155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2723161	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2723164	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2723172	1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2723176	1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2723186	1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2723191	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2723194	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2723196	0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2723198	0.95[ASN][1000 genomes]
rs2723199	0.95[ASN][1000 genomes]
rs2723200	0.95[ASN][1000 genomes]
rs2723201	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2723202	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2723203	0.95[ASN][1000 genomes]
rs28947185	0.86[ASN][1000 genomes]
rs3811046	0.83[CHD][hapmap]
rs3811047	0.83[CHD][hapmap]
rs3917349	1.00[EUR][1000 genomes]
rs3917367	1.00[AMR][1000 genomes]
rs4074747	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs4392270	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4589758	0.86[ASN][1000 genomes]
rs4611652	0.86[ASN][1000 genomes]
rs4848305	1.00[EUR][1000 genomes]
rs4849133	0.86[ASN][1000 genomes]
rs57092685	0.87[ASN][1000 genomes]
rs6725910	0.95[ASN][1000 genomes]
rs6736642	0.86[ASN][1000 genomes]
rs6751093	0.95[ASN][1000 genomes]
rs7559606	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7577574	0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs7602680	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7608836	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv961338	chr2:113657963-113691422	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113686000-113690600	Weak transcription	Placenta	Placenta

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