Variant report

Variant	rs7602680
Chromosome Location	chr2:113682413-113682414
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:113488382..113489971-chr2:113681773..113683855,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IL37-2	chr2:113679974-113683444	ucscGeneNc_uc002tji_1

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10496442	0.83[JPT][hapmap]
rs13023868	0.92[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs13023984	0.98[ASN][1000 genomes]
rs17042569	1.00[AMR][1000 genomes]
rs2464908	0.89[ASN][1000 genomes]
rs2464909	0.89[ASN][1000 genomes]
rs2464910	0.89[ASN][1000 genomes]
rs2466449	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2708918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2708922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2708923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2708925	0.92[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs2708926	0.89[ASN][1000 genomes]
rs2708934	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2708935	0.89[ASN][1000 genomes]
rs2708936	0.89[ASN][1000 genomes]
rs2708972	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2708973	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2723153	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2723155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2723161	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2723164	0.84[CHB][hapmap];0.92[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes]
rs2723172	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2723176	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723186	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723191	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723194	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2723195	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2723196	0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs2723198	0.89[ASN][1000 genomes]
rs2723199	0.89[ASN][1000 genomes]
rs2723200	0.89[ASN][1000 genomes]
rs2723201	0.82[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs2723202	0.83[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs2723203	0.89[ASN][1000 genomes]
rs28947185	0.98[ASN][1000 genomes]
rs3917349	1.00[EUR][1000 genomes]
rs3917367	1.00[AMR][1000 genomes]
rs4392270	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4589758	0.98[ASN][1000 genomes]
rs4611652	0.98[ASN][1000 genomes]
rs4848305	1.00[EUR][1000 genomes]
rs4849133	0.98[ASN][1000 genomes]
rs57092685	1.00[ASN][1000 genomes]
rs6725910	0.89[ASN][1000 genomes]
rs6736642	0.98[ASN][1000 genomes]
rs6751093	0.89[ASN][1000 genomes]
rs7559606	0.92[CHB][hapmap];0.91[JPT][hapmap]
rs7577574	0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv961338	chr2:113657963-113691422	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1003372	chr2:113670890-113682621	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113671600-113683000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:113674400-113683000	Weak transcription	Gastric	stomach
3	chr2:113678200-113683400	Enhancers	Fetal Intestine Small	intestine
4	chr2:113678800-113683400	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr2:113679600-113682800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr2:113681000-113683000	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr2:113681200-113682600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:113681200-113683800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr2:113681600-113682800	Enhancers	K562	blood
10	chr2:113681800-113682600	Enhancers	Primary hematopoietic stem cells	blood
11	chr2:113681800-113683000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr2:113681800-113683400	Enhancers	Stomach Mucosa	stomach
13	chr2:113682000-113683200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr2:113682200-113683000	Enhancers	HepG2	liver
15	chr2:113682400-113682800	Weak transcription	Colonic Mucosa	Colon
16	chr2:113682400-113682800	Weak transcription	Fetal Intestine Large	intestine
17	chr2:113682400-113682800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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