Variant report

Variant	rs2723153
Chromosome Location	chr2:113659632-113659633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:113656283..113658369-chr2:113658759..113661477,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10496442	0.82[JPT][hapmap]
rs13023868	0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs13023984	0.84[ASN][1000 genomes]
rs17042569	1.00[AMR][1000 genomes]
rs2466449	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2708918	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2708922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2708923	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2708925	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2708934	0.91[CHB][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2708972	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2708973	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2723155	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2723161	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2723164	0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs2723172	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2723176	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2723186	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2723191	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2723194	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2723195	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2723196	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2723201	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2723202	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs28947185	0.87[ASN][1000 genomes]
rs3917349	1.00[EUR][1000 genomes]
rs3917367	1.00[AMR][1000 genomes]
rs4074747	0.84[JPT][hapmap]
rs4392270	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4589758	0.84[ASN][1000 genomes]
rs4611652	0.84[ASN][1000 genomes]
rs4848305	1.00[EUR][1000 genomes]
rs4849133	0.84[ASN][1000 genomes]
rs57092685	0.86[ASN][1000 genomes]
rs6736642	0.84[ASN][1000 genomes]
rs7559606	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs7577574	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7602680	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv961338	chr2:113657963-113691422	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113655200-113659800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr2:113657400-113660600	Enhancers	Fetal Intestine Large	intestine
3	chr2:113657400-113660800	Enhancers	Fetal Intestine Small	intestine
4	chr2:113659200-113660000	Enhancers	HepG2	liver
5	chr2:113659600-113659800	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr2:113659600-113660000	Enhancers	Rectal Mucosa Donor 29	rectum

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