Variant report
| Variant | rs28947185 |
|---|---|
| Chromosome Location | chr2:113669198-113669199 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs13023868 | 0.97[ASN][1000 genomes] |
| rs13023984 | 0.97[ASN][1000 genomes] |
| rs2464908 | 0.87[ASN][1000 genomes] |
| rs2464909 | 0.87[ASN][1000 genomes] |
| rs2464910 | 0.87[ASN][1000 genomes] |
| rs2466449 | 1.00[ASN][1000 genomes] |
| rs2708925 | 0.87[ASN][1000 genomes] |
| rs2708926 | 0.87[ASN][1000 genomes] |
| rs2708934 | 0.89[ASN][1000 genomes] |
| rs2708935 | 0.87[ASN][1000 genomes] |
| rs2708936 | 0.87[ASN][1000 genomes] |
| rs2708972 | 1.00[ASN][1000 genomes] |
| rs2723153 | 0.87[ASN][1000 genomes] |
| rs2723155 | 0.84[ASN][1000 genomes] |
| rs2723176 | 0.98[ASN][1000 genomes] |
| rs2723186 | 0.98[ASN][1000 genomes] |
| rs2723191 | 0.98[ASN][1000 genomes] |
| rs2723195 | 0.86[ASN][1000 genomes] |
| rs2723196 | 0.84[ASN][1000 genomes] |
| rs2723198 | 0.87[ASN][1000 genomes] |
| rs2723199 | 0.87[ASN][1000 genomes] |
| rs2723200 | 0.87[ASN][1000 genomes] |
| rs2723201 | 0.87[ASN][1000 genomes] |
| rs2723202 | 0.87[ASN][1000 genomes] |
| rs2723203 | 0.87[ASN][1000 genomes] |
| rs4392270 | 0.98[ASN][1000 genomes] |
| rs4589758 | 0.97[ASN][1000 genomes] |
| rs4611652 | 0.97[ASN][1000 genomes] |
| rs4849133 | 0.97[ASN][1000 genomes] |
| rs57092685 | 0.96[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6725910 | 0.87[ASN][1000 genomes] |
| rs6736642 | 0.97[ASN][1000 genomes] |
| rs6751093 | 0.87[ASN][1000 genomes] |
| rs7559606 | 0.92[AFR][1000 genomes] |
| rs7577574 | 0.97[ASN][1000 genomes] |
| rs7602680 | 0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv961338 | chr2:113657963-113691422 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:113664800-113678000 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
