Variant report

Variant	rs2464910
Chromosome Location	chr2:113686944-113686945
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs10084249	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10170349	0.93[EUR][1000 genomes]
rs10173180	0.93[EUR][1000 genomes]
rs10199469	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13023868	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13023984	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13389731	0.96[EUR][1000 genomes]
rs13389817	0.96[EUR][1000 genomes]
rs13399759	0.96[EUR][1000 genomes]
rs13420333	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13423355	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17042542	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2464908	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2464909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2464911	0.92[EUR][1000 genomes]
rs2464912	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2464913	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2466445	0.94[EUR][1000 genomes]
rs2466448	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2466449	0.87[ASN][1000 genomes]
rs2466451	0.92[EUR][1000 genomes]
rs2708917	0.89[EUR][1000 genomes]
rs2708924	0.91[EUR][1000 genomes]
rs2708925	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708926	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708927	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2708933	0.84[AFR][1000 genomes]
rs2708934	0.98[ASN][1000 genomes]
rs2708935	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708936	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708938	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2708939	0.83[EUR][1000 genomes]
rs2708940	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2708941	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2708942	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2708943	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2708944	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2708947	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2708948	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2708949	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2708950	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2708952	0.87[EUR][1000 genomes]
rs2708953	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2708954	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2708955	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2708956	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2708957	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2708958	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2708959	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2708960	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2708961	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2708962	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2708963	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2708964	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2708965	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2708966	0.94[EUR][1000 genomes]
rs2708967	0.94[EUR][1000 genomes]
rs2708968	0.93[EUR][1000 genomes]
rs2708969	0.93[EUR][1000 genomes]
rs2708970	0.83[EUR][1000 genomes]
rs2708972	0.87[ASN][1000 genomes]
rs2723150	0.91[EUR][1000 genomes]
rs2723156	0.94[EUR][1000 genomes]
rs2723159	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2723160	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2723162	0.98[EUR][1000 genomes]
rs2723164	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2723165	0.96[EUR][1000 genomes]
rs2723166	0.96[EUR][1000 genomes]
rs2723168	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2723169	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2723170	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2723171	0.94[EUR][1000 genomes]
rs2723173	0.96[EUR][1000 genomes]
rs2723174	0.93[EUR][1000 genomes]
rs2723175	0.93[EUR][1000 genomes]
rs2723176	0.89[ASN][1000 genomes]
rs2723177	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2723179	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2723180	0.98[EUR][1000 genomes]
rs2723181	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2723182	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2723183	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2723184	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2723185	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2723186	0.89[ASN][1000 genomes]
rs2723187	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2723189	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2723190	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2723191	0.89[ASN][1000 genomes]
rs2723192	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2723193	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2723195	0.95[ASN][1000 genomes]
rs2723196	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2723198	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723199	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723200	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723201	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723202	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723203	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28947185	0.87[ASN][1000 genomes]
rs2954819	0.91[EUR][1000 genomes]
rs2954820	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4392270	0.89[ASN][1000 genomes]
rs4589758	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4611652	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4849133	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57092685	0.89[ASN][1000 genomes]
rs60011794	0.94[EUR][1000 genomes]
rs6725910	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6736642	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6751093	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73959112	0.96[EUR][1000 genomes]
rs7559606	0.86[ASN][1000 genomes]
rs7577574	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7591311	0.96[EUR][1000 genomes]
rs7602680	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv961338	chr2:113657963-113691422	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113686000-113690600	Weak transcription	Placenta	Placenta

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