Variant report

Variant	rs2708924
Chromosome Location	chr2:113645942-113645943
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:113626794..113629154-chr2:113645648..113647958,2	MCF-7	breast:

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10084249	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10170349	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10173180	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10199469	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13023868	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs13023984	0.91[EUR][1000 genomes]
rs13389731	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13389817	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13399759	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13420333	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13423355	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13426809	1.00[ASN][1000 genomes]
rs17042542	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17611872	1.00[ASN][1000 genomes]
rs2464908	0.84[EUR][1000 genomes]
rs2464909	0.91[EUR][1000 genomes]
rs2464910	0.91[EUR][1000 genomes]
rs2464911	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2464912	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2464913	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2466445	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2466448	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2466451	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708917	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708925	0.91[CEU][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs2708926	0.91[EUR][1000 genomes]
rs2708927	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708935	0.91[EUR][1000 genomes]
rs2708936	0.91[EUR][1000 genomes]
rs2708938	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708939	1.00[ASN][1000 genomes]
rs2708940	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708941	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708942	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708943	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708944	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708947	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708948	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708949	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708950	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708952	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708953	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708954	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708955	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708956	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708957	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708958	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708959	0.90[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708960	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708961	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708962	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708963	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708964	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708965	0.91[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708966	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708967	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708968	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708969	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708970	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723150	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723159	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723160	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723162	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723164	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs2723165	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723166	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723168	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723169	0.90[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723170	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723171	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723173	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723174	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723175	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723177	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723179	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723180	0.93[EUR][1000 genomes]
rs2723181	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723182	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723183	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723184	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723185	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723187	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723189	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723190	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723192	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723193	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723196	0.91[CEU][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs2723198	0.91[EUR][1000 genomes]
rs2723199	0.91[EUR][1000 genomes]
rs2723200	0.91[EUR][1000 genomes]
rs2723201	0.91[EUR][1000 genomes]
rs2723202	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs2723203	0.91[EUR][1000 genomes]
rs28938792	1.00[ASN][1000 genomes]
rs2954819	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2954820	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4589758	0.91[EUR][1000 genomes]
rs4611652	0.91[EUR][1000 genomes]
rs4849133	0.91[EUR][1000 genomes]
rs60011794	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6725910	0.91[EUR][1000 genomes]
rs6736642	0.91[EUR][1000 genomes]
rs6751093	0.91[EUR][1000 genomes]
rs73959112	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7577574	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs7591311	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113639200-113647800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr2:113640400-113647800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:113643600-113647800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:113643600-113648000	Weak transcription	HMEC	breast
5	chr2:113644400-113647800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:113644400-113647800	Weak transcription	NHEK	skin
7	chr2:113644600-113646400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr2:113644600-113647800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:113644800-113646400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr2:113645200-113646600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr2:113645200-113646600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr2:113645400-113646200	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr2:113645400-113646400	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr2:113645600-113646200	Enhancers	Fetal Lung	lung
15	chr2:113645600-113646400	Enhancers	GM12878-XiMat	blood
16	chr2:113645800-113646600	Enhancers	Primary hematopoietic stem cells	blood

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