Variant report

Variant	rs73959112
Chromosome Location	chr2:113700394-113700395
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:113694655..113699559-chr2:113699730..113703257,4	MCF-7	breast:
2	chr2:113699183..113701055-chr2:113704655..113706324,2	MCF-7	breast:
3	chr2:113695165..113698377-chr2:113699884..113701948,3	K562	blood:

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10084249	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10170349	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10173180	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10199469	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13023868	0.96[EUR][1000 genomes]
rs13023984	0.96[EUR][1000 genomes]
rs13389731	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13389817	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13399759	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13420333	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13423355	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13426809	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17042542	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17611872	1.00[ASN][1000 genomes]
rs2464908	0.89[EUR][1000 genomes]
rs2464909	0.96[EUR][1000 genomes]
rs2464910	0.96[EUR][1000 genomes]
rs2464911	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2464912	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2464913	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2466445	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2466448	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2466451	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708917	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708924	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708925	0.96[EUR][1000 genomes]
rs2708926	0.96[EUR][1000 genomes]
rs2708927	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708935	0.96[EUR][1000 genomes]
rs2708936	0.96[EUR][1000 genomes]
rs2708938	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708939	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708940	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708941	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708942	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708943	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708944	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708947	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708948	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708949	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708950	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708952	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708953	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708954	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708955	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708956	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708957	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708958	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708959	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708960	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708961	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708962	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708963	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708964	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708965	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708966	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708967	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708968	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708969	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708970	1.00[ASN][1000 genomes]
rs2723150	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723156	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723159	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723160	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723162	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723164	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2723165	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723166	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723168	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723169	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723170	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723171	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723173	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723174	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723175	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723177	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723179	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723180	0.94[EUR][1000 genomes]
rs2723181	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723182	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723183	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723184	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723185	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723187	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723189	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723190	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723192	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723193	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723194	0.81[AFR][1000 genomes]
rs2723196	0.96[EUR][1000 genomes]
rs2723198	0.96[EUR][1000 genomes]
rs2723199	0.96[EUR][1000 genomes]
rs2723200	0.96[EUR][1000 genomes]
rs2723201	0.96[EUR][1000 genomes]
rs2723202	0.96[EUR][1000 genomes]
rs2723203	0.96[EUR][1000 genomes]
rs28938792	1.00[ASN][1000 genomes]
rs2954819	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2954820	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4589758	0.96[EUR][1000 genomes]
rs4611652	0.96[EUR][1000 genomes]
rs4849133	0.96[EUR][1000 genomes]
rs60011794	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6725910	0.96[EUR][1000 genomes]
rs6736642	0.96[EUR][1000 genomes]
rs6751093	0.96[EUR][1000 genomes]
rs7577574	0.96[EUR][1000 genomes]
rs7591311	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv979388	chr2:113696105-113705504	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113697600-113700400	Enhancers	Colon Smooth Muscle	Colon
2	chr2:113699000-113700800	Enhancers	NHEK	skin
3	chr2:113699000-113701000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:113699200-113700600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:113699200-113700600	Enhancers	HMEC	breast
6	chr2:113699400-113700400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:113699400-113700400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:113699600-113700400	Enhancers	Fetal Intestine Small	intestine
9	chr2:113699600-113700400	Enhancers	Gastric	stomach
10	chr2:113699600-113700600	Enhancers	HepG2	liver
11	chr2:113699800-113702400	Weak transcription	Liver	Liver
12	chr2:113700000-113700400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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