Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IL37-3	chr2:113690202-113690748	NONHSAT073735

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs13389817	0.82[AFR][1000 genomes]
rs13399759	0.81[AFR][1000 genomes]
rs17042569	1.00[AMR][1000 genomes]
rs2466449	1.00[EUR][1000 genomes]
rs2708918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2708922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2708923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2708934	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2708972	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2708973	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2723153	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2723155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2723161	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2723162	0.91[YRI][hapmap]
rs2723172	0.81[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2723176	1.00[EUR][1000 genomes]
rs2723186	1.00[EUR][1000 genomes]
rs2723191	1.00[EUR][1000 genomes]
rs2723195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3917349	1.00[EUR][1000 genomes]
rs3917367	1.00[AMR][1000 genomes]
rs4392270	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4848305	1.00[EUR][1000 genomes]
rs73959112	0.81[AFR][1000 genomes]
rs7591311	0.82[AFR][1000 genomes]
rs7602680	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv961338	chr2:113657963-113691422	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113690600-113691200	Enhancers	Placenta	Placenta

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