Variant report

Variant	rs2708923
Chromosome Location	chr2:113643024-113643025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:113506908..113507899-chr2:113642257..113643157,9	K562	blood:
2	chr2:113506933..113508420-chr2:113642009..113643539,12	MCF-7	breast:
3	chr2:113507028..113508207-chr2:113642204..113643190,8	MCF-7	breast:
4	chr2:113642230..113643259-chr2:113698990..113700080,4	MCF-7	breast:
5	chr2:113509910..113512793-chr2:113641037..113644558,4	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17042569	1.00[AMR][1000 genomes]
rs2466449	1.00[EUR][1000 genomes]
rs2708918	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2708934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2708972	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2708973	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2723153	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2723155	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2723161	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2723172	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2723176	1.00[EUR][1000 genomes]
rs2723186	1.00[EUR][1000 genomes]
rs2723191	1.00[EUR][1000 genomes]
rs2723194	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2723195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3917349	1.00[EUR][1000 genomes]
rs3917367	1.00[AMR][1000 genomes]
rs4392270	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4848305	1.00[EUR][1000 genomes]
rs7602680	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113629200-113643200	Weak transcription	Right Atrium	heart
2	chr2:113632800-113644400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:113637000-113643600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:113639200-113644400	Enhancers	NHEK	skin
5	chr2:113639200-113647800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr2:113639600-113645400	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr2:113640400-113645400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr2:113640400-113647800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr2:113642200-113643200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:113642200-113643200	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr2:113642200-113643200	Enhancers	Colon Smooth Muscle	Colon
12	chr2:113642200-113643200	Enhancers	GM12878-XiMat	blood
13	chr2:113642200-113643200	Enhancers	Hela-S3	cervix
14	chr2:113642200-113643600	Enhancers	HMEC	breast
15	chr2:113642400-113643200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:113642400-113643200	Enhancers	Primary T cells fromperipheralblood	blood
17	chr2:113642400-113643200	Enhancers	Primary hematopoietic stem cells	blood
18	chr2:113642400-113643200	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr2:113642400-113643200	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr2:113642400-113643200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr2:113642400-113643200	Enhancers	Fetal Thymus	thymus
22	chr2:113642400-113643200	Enhancers	K562	blood
23	chr2:113642400-113643400	Enhancers	HepG2	liver
24	chr2:113642400-113643400	Enhancers	NHDF-Ad	bronchial
25	chr2:113642600-113643200	Enhancers	Fetal Intestine Small	intestine
26	chr2:113642600-113643400	Enhancers	Osteobl	bone
27	chr2:113642800-113643400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr2:113642800-113643600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr2:113642800-113644800	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr2:113643000-113644600	Weak transcription	Monocytes-CD14+_RO01746	blood

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