Variant report

Variant	rs13426809
Chromosome Location	chr2:113717524-113717525
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:113506583..113509292-chr2:113716187..113718342,2	K562	blood:
2	chr2:113504578..113507107-chr2:113715041..113717876,2	MCF-7	breast:
3	chr2:113716265..113720193-chr2:113720770..113723429,3	MCF-7	breast:

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10084249	1.00[ASN][1000 genomes]
rs10170349	1.00[ASN][1000 genomes]
rs10173180	1.00[ASN][1000 genomes]
rs10174484	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs10177899	0.88[YRI][hapmap]
rs10199469	1.00[ASN][1000 genomes]
rs13023868	0.81[CEU][hapmap]
rs13389731	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13389817	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13399759	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13420333	1.00[ASN][1000 genomes]
rs13423355	1.00[ASN][1000 genomes]
rs17042542	1.00[ASN][1000 genomes]
rs17611872	1.00[ASN][1000 genomes]
rs2464911	1.00[ASN][1000 genomes]
rs2464912	1.00[ASN][1000 genomes]
rs2464913	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2466445	1.00[ASN][1000 genomes]
rs2466448	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2466451	1.00[ASN][1000 genomes]
rs2708917	1.00[ASN][1000 genomes]
rs2708924	1.00[ASN][1000 genomes]
rs2708925	0.81[CEU][hapmap]
rs2708927	1.00[ASN][1000 genomes]
rs2708938	1.00[ASN][1000 genomes]
rs2708939	1.00[ASN][1000 genomes]
rs2708940	1.00[ASN][1000 genomes]
rs2708941	1.00[ASN][1000 genomes]
rs2708942	1.00[ASN][1000 genomes]
rs2708943	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2708944	1.00[ASN][1000 genomes]
rs2708947	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2708948	1.00[ASN][1000 genomes]
rs2708949	1.00[ASN][1000 genomes]
rs2708950	1.00[ASN][1000 genomes]
rs2708952	1.00[ASN][1000 genomes]
rs2708953	1.00[ASN][1000 genomes]
rs2708954	1.00[ASN][1000 genomes]
rs2708955	1.00[ASN][1000 genomes]
rs2708956	1.00[ASN][1000 genomes]
rs2708957	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2708958	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2708959	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2708960	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2708961	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2708962	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2708963	1.00[ASN][1000 genomes]
rs2708964	1.00[ASN][1000 genomes]
rs2708965	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2708966	1.00[ASN][1000 genomes]
rs2708967	1.00[ASN][1000 genomes]
rs2708968	1.00[ASN][1000 genomes]
rs2708969	1.00[ASN][1000 genomes]
rs2708970	1.00[ASN][1000 genomes]
rs2723150	1.00[ASN][1000 genomes]
rs2723156	1.00[ASN][1000 genomes]
rs2723159	1.00[ASN][1000 genomes]
rs2723160	1.00[ASN][1000 genomes]
rs2723162	0.82[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2723164	0.82[CEU][hapmap];0.88[AMR][1000 genomes]
rs2723165	1.00[ASN][1000 genomes]
rs2723166	1.00[ASN][1000 genomes]
rs2723168	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2723169	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2723170	1.00[ASN][1000 genomes]
rs2723171	1.00[ASN][1000 genomes]
rs2723173	1.00[ASN][1000 genomes]
rs2723174	1.00[ASN][1000 genomes]
rs2723175	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2723177	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2723179	1.00[ASN][1000 genomes]
rs2723181	1.00[ASN][1000 genomes]
rs2723182	1.00[ASN][1000 genomes]
rs2723183	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2723184	1.00[ASN][1000 genomes]
rs2723185	1.00[ASN][1000 genomes]
rs2723187	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2723189	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2723190	1.00[ASN][1000 genomes]
rs2723192	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2723193	1.00[ASN][1000 genomes]
rs2723196	0.81[CEU][hapmap]
rs28938792	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2954819	1.00[ASN][1000 genomes]
rs2954820	1.00[ASN][1000 genomes]
rs56179411	0.95[AFR][1000 genomes]
rs58964845	0.84[AFR][1000 genomes]
rs60011794	1.00[ASN][1000 genomes]
rs72942471	0.95[AFR][1000 genomes]
rs72942486	0.83[AFR][1000 genomes]
rs73959112	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7577574	0.82[CEU][hapmap]
rs7591311	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv2880	chr2:113716802-113736921	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113715800-113720600	Weak transcription	Fetal Intestine Small	intestine
2	chr2:113717200-113718000	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links