Variant report

Variant	rs28938792
Chromosome Location	chr2:113759979-113759980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:113756642..113760265-chr2:113761535..113765046,5	K562	blood:
2	chr2:113751007..113754364-chr2:113757829..113763549,5	K562	blood:

Variant related genes	Relation type
ENSG00000136694	Chromatin interaction
ENSG00000232090	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10084249	1.00[ASN][1000 genomes]
rs10170349	1.00[ASN][1000 genomes]
rs10173180	1.00[ASN][1000 genomes]
rs10199469	1.00[ASN][1000 genomes]
rs13389731	1.00[ASN][1000 genomes]
rs13389817	1.00[ASN][1000 genomes]
rs13399759	1.00[ASN][1000 genomes]
rs13420333	1.00[ASN][1000 genomes]
rs13423355	1.00[ASN][1000 genomes]
rs13426809	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17042542	1.00[ASN][1000 genomes]
rs17611872	1.00[ASN][1000 genomes]
rs2464911	1.00[ASN][1000 genomes]
rs2464912	1.00[ASN][1000 genomes]
rs2464913	1.00[ASN][1000 genomes]
rs2466445	1.00[ASN][1000 genomes]
rs2466448	1.00[ASN][1000 genomes]
rs2466451	1.00[ASN][1000 genomes]
rs2708917	1.00[ASN][1000 genomes]
rs2708924	1.00[ASN][1000 genomes]
rs2708927	1.00[ASN][1000 genomes]
rs2708938	1.00[ASN][1000 genomes]
rs2708939	1.00[ASN][1000 genomes]
rs2708940	1.00[ASN][1000 genomes]
rs2708941	1.00[ASN][1000 genomes]
rs2708942	1.00[ASN][1000 genomes]
rs2708943	1.00[ASN][1000 genomes]
rs2708944	1.00[ASN][1000 genomes]
rs2708947	1.00[ASN][1000 genomes]
rs2708948	1.00[ASN][1000 genomes]
rs2708949	1.00[ASN][1000 genomes]
rs2708950	1.00[ASN][1000 genomes]
rs2708952	1.00[ASN][1000 genomes]
rs2708953	1.00[ASN][1000 genomes]
rs2708954	1.00[ASN][1000 genomes]
rs2708955	1.00[ASN][1000 genomes]
rs2708956	1.00[ASN][1000 genomes]
rs2708957	1.00[ASN][1000 genomes]
rs2708958	1.00[ASN][1000 genomes]
rs2708959	1.00[ASN][1000 genomes]
rs2708960	1.00[ASN][1000 genomes]
rs2708961	1.00[ASN][1000 genomes]
rs2708962	1.00[ASN][1000 genomes]
rs2708963	1.00[ASN][1000 genomes]
rs2708964	1.00[ASN][1000 genomes]
rs2708965	1.00[ASN][1000 genomes]
rs2708966	1.00[ASN][1000 genomes]
rs2708967	1.00[ASN][1000 genomes]
rs2708968	1.00[ASN][1000 genomes]
rs2708969	1.00[ASN][1000 genomes]
rs2708970	1.00[ASN][1000 genomes]
rs2723150	1.00[ASN][1000 genomes]
rs2723156	1.00[ASN][1000 genomes]
rs2723159	1.00[ASN][1000 genomes]
rs2723160	1.00[ASN][1000 genomes]
rs2723162	1.00[ASN][1000 genomes]
rs2723165	1.00[ASN][1000 genomes]
rs2723166	1.00[ASN][1000 genomes]
rs2723168	1.00[ASN][1000 genomes]
rs2723169	1.00[ASN][1000 genomes]
rs2723170	1.00[ASN][1000 genomes]
rs2723171	1.00[ASN][1000 genomes]
rs2723173	1.00[ASN][1000 genomes]
rs2723174	1.00[ASN][1000 genomes]
rs2723175	1.00[ASN][1000 genomes]
rs2723177	1.00[ASN][1000 genomes]
rs2723179	1.00[ASN][1000 genomes]
rs2723181	1.00[ASN][1000 genomes]
rs2723182	1.00[ASN][1000 genomes]
rs2723183	1.00[ASN][1000 genomes]
rs2723184	1.00[ASN][1000 genomes]
rs2723185	1.00[ASN][1000 genomes]
rs2723187	1.00[ASN][1000 genomes]
rs2723189	1.00[ASN][1000 genomes]
rs2723190	1.00[ASN][1000 genomes]
rs2723192	1.00[ASN][1000 genomes]
rs2723193	1.00[ASN][1000 genomes]
rs2954819	1.00[ASN][1000 genomes]
rs2954820	1.00[ASN][1000 genomes]
rs60011794	1.00[ASN][1000 genomes]
rs73959112	1.00[ASN][1000 genomes]
rs7591311	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1007254	chr2:113726982-113887782	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv535894	chr2:113726982-113887782	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv874878	chr2:113742734-113776076	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113759200-113765000	Weak transcription	Primary T cells from cord blood	blood

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