Variant report
Variant | rs17611872 |
---|---|
Chromosome Location | chr2:113839856-113839857 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:4 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr2:113838578..113840540-chr2:113849414..113851474,2 | MCF-7 | breast: | |
2 | chr2:113835964..113840226-chr2:113955452..113959687,5 | MCF-7 | breast: | |
3 | chr2:113839317..113841682-chr2:113938699..113940328,2 | K562 | blood: | |
4 | chr2:113741483..113743922-chr2:113839528..113841138,2 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000125637 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10084249 | 1.00[ASN][1000 genomes] |
rs10170349 | 1.00[ASN][1000 genomes] |
rs10173180 | 1.00[ASN][1000 genomes] |
rs10199469 | 1.00[ASN][1000 genomes] |
rs13389731 | 1.00[ASN][1000 genomes] |
rs13389817 | 1.00[ASN][1000 genomes] |
rs13399759 | 1.00[ASN][1000 genomes] |
rs13420333 | 1.00[ASN][1000 genomes] |
rs13423355 | 1.00[ASN][1000 genomes] |
rs13426809 | 1.00[ASN][1000 genomes] |
rs17042542 | 1.00[ASN][1000 genomes] |
rs2464911 | 1.00[ASN][1000 genomes] |
rs2464912 | 1.00[ASN][1000 genomes] |
rs2464913 | 1.00[ASN][1000 genomes] |
rs2466445 | 1.00[ASN][1000 genomes] |
rs2466448 | 1.00[ASN][1000 genomes] |
rs2466451 | 1.00[ASN][1000 genomes] |
rs2708924 | 1.00[ASN][1000 genomes] |
rs2708927 | 1.00[ASN][1000 genomes] |
rs2708938 | 1.00[ASN][1000 genomes] |
rs2708939 | 1.00[ASN][1000 genomes] |
rs2708940 | 1.00[ASN][1000 genomes] |
rs2708941 | 1.00[ASN][1000 genomes] |
rs2708942 | 1.00[ASN][1000 genomes] |
rs2708943 | 1.00[ASN][1000 genomes] |
rs2708944 | 1.00[ASN][1000 genomes] |
rs2708947 | 1.00[ASN][1000 genomes] |
rs2708948 | 1.00[ASN][1000 genomes] |
rs2708949 | 1.00[ASN][1000 genomes] |
rs2708950 | 1.00[ASN][1000 genomes] |
rs2708952 | 1.00[ASN][1000 genomes] |
rs2708953 | 1.00[ASN][1000 genomes] |
rs2708954 | 1.00[ASN][1000 genomes] |
rs2708955 | 1.00[ASN][1000 genomes] |
rs2708956 | 1.00[ASN][1000 genomes] |
rs2708957 | 1.00[ASN][1000 genomes] |
rs2708958 | 1.00[ASN][1000 genomes] |
rs2708959 | 1.00[ASN][1000 genomes] |
rs2708960 | 1.00[ASN][1000 genomes] |
rs2708961 | 1.00[ASN][1000 genomes] |
rs2708962 | 1.00[ASN][1000 genomes] |
rs2708963 | 1.00[ASN][1000 genomes] |
rs2708964 | 1.00[ASN][1000 genomes] |
rs2708965 | 1.00[ASN][1000 genomes] |
rs2708966 | 1.00[ASN][1000 genomes] |
rs2708967 | 1.00[ASN][1000 genomes] |
rs2708968 | 1.00[ASN][1000 genomes] |
rs2708969 | 1.00[ASN][1000 genomes] |
rs2708970 | 1.00[ASN][1000 genomes] |
rs2723150 | 1.00[ASN][1000 genomes] |
rs2723156 | 1.00[ASN][1000 genomes] |
rs2723159 | 1.00[ASN][1000 genomes] |
rs2723160 | 1.00[ASN][1000 genomes] |
rs2723162 | 1.00[ASN][1000 genomes] |
rs2723165 | 1.00[ASN][1000 genomes] |
rs2723166 | 1.00[ASN][1000 genomes] |
rs2723168 | 1.00[ASN][1000 genomes] |
rs2723169 | 1.00[ASN][1000 genomes] |
rs2723170 | 1.00[ASN][1000 genomes] |
rs2723171 | 1.00[ASN][1000 genomes] |
rs2723173 | 1.00[ASN][1000 genomes] |
rs2723174 | 1.00[ASN][1000 genomes] |
rs2723175 | 1.00[ASN][1000 genomes] |
rs2723177 | 1.00[ASN][1000 genomes] |
rs2723179 | 1.00[ASN][1000 genomes] |
rs2723181 | 1.00[ASN][1000 genomes] |
rs2723182 | 1.00[ASN][1000 genomes] |
rs2723183 | 1.00[ASN][1000 genomes] |
rs2723184 | 1.00[ASN][1000 genomes] |
rs2723185 | 1.00[ASN][1000 genomes] |
rs2723187 | 1.00[ASN][1000 genomes] |
rs2723189 | 1.00[ASN][1000 genomes] |
rs2723190 | 1.00[ASN][1000 genomes] |
rs2723192 | 1.00[ASN][1000 genomes] |
rs2723193 | 1.00[ASN][1000 genomes] |
rs28938792 | 1.00[ASN][1000 genomes] |
rs2954819 | 1.00[ASN][1000 genomes] |
rs2954820 | 1.00[ASN][1000 genomes] |
rs60011794 | 1.00[ASN][1000 genomes] |
rs73959112 | 1.00[ASN][1000 genomes] |
rs7591311 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv532471 | chr2:113682449-113862981 | ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
2 | nsv997348 | chr2:113688093-113986508 | Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
3 | nsv1007254 | chr2:113726982-113887782 | Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
4 | nsv535894 | chr2:113726982-113887782 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
5 | nsv2881 | chr2:113800805-113846597 | Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:113834600-113840000 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |
2 | chr2:113838200-113842200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
3 | chr2:113838200-113842200 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
4 | chr2:113838200-113842200 | Weak transcription | Stomach Mucosa | stomach |
5 | chr2:113838600-113842000 | Weak transcription | NHEK | skin |
6 | chr2:113838800-113842000 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
7 | chr2:113839400-113843600 | Weak transcription | Esophagus | oesophagus |
8 | chr2:113839600-113842200 | Weak transcription | HMEC | breast |