Variant report

Variant	rs55799726
Chromosome Location	chr2:77002946-77002947
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10165411	0.85[EUR][1000 genomes]
rs10207289	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17404969	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2860868	0.86[EUR][1000 genomes]
rs4274622	0.86[EUR][1000 genomes]
rs55756601	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56259618	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60161954	0.80[EUR][1000 genomes]
rs62170445	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62170447	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62170451	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62172099	0.84[EUR][1000 genomes]
rs62172100	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62172104	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72815415	0.90[AMR][1000 genomes]
rs72815416	0.90[AMR][1000 genomes]
rs9917184	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874320	chr2:76971709-77013724	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
2	nsv1011401	chr2:76982546-77068714	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv999822	chr2:76994539-77022762	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77002400-77008400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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