Variant report

Variant	rs62172100
Chromosome Location	chr2:77011894-77011895
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10165411	0.86[EUR][1000 genomes]
rs10207289	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17404969	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55756601	0.80[EUR][1000 genomes]
rs55799726	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56259618	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60161954	0.84[EUR][1000 genomes]
rs62170445	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62170447	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62170448	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62170451	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62172099	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62172104	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72815415	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72815416	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9917184	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874320	chr2:76971709-77013724	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
2	nsv1011401	chr2:76982546-77068714	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv999822	chr2:76994539-77022762	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
4	nsv1005091	chr2:77009508-77112403	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77009000-77039000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:77009200-77013000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr2:77009400-77013200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr2:77009400-77022600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr2:77009600-77038200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr2:77010400-77012400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr2:77010800-77012800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr2:77011400-77014600	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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