Variant report

Variant	rs9917184
Chromosome Location	chr2:76989568-76989569
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10165411	0.93[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10207289	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17404969	0.81[CEU][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs4274622	0.84[CEU][hapmap]
rs55756601	0.87[EUR][1000 genomes]
rs55799726	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56259618	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60161954	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62170445	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62170447	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62170448	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62170451	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62172099	0.85[EUR][1000 genomes]
rs62172100	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62172104	0.81[AMR][1000 genomes]
rs72815415	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72815416	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv582235	chr2:76881210-76997763	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv874320	chr2:76971709-77013724	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
3	nsv458263	chr2:76976626-76994984	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
4	nsv1011401	chr2:76982546-77068714	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9917184	ACTG2	cis	cerebellum	SCAN
rs9917184	TTC31	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76988000-76998400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:76988200-76990400	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr2:76989200-76989800	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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