Variant report

Variant	rs55801328
Chromosome Location	chr6:54822849-54822850
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55954156	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56272400	1.00[AMR][1000 genomes]
rs57287621	1.00[AMR][1000 genomes]
rs60013096	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60517516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61632434	0.84[AFR][1000 genomes]
rs73431481	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73432338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73434410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73742869	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73742883	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54821800-54824800	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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