Variant report
| Variant | rs73742883 |
|---|---|
| Chromosome Location | chr6:54825769-54825770 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000261235 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs55801328 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs55954156 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56272400 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57287621 | 1.00[AMR][1000 genomes] |
| rs60013096 | 1.00[AMR][1000 genomes] |
| rs60517516 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61632434 | 0.86[AFR][1000 genomes] |
| rs73431481 | 1.00[AMR][1000 genomes] |
| rs73432338 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73434410 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73742869 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv885900 | chr6:54517968-54852462 | Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
