Variant report

Variant	rs55806464
Chromosome Location	chr10:4856546-4856547
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:4855444..4858431-chr10:5530481..5532071,2	MCF-7	breast:
2	chr10:4855102..4856671-chr10:5498046..5499803,2	K562	blood:
3	chr10:4856147..4859117-chr10:5323721..5326556,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs60398975	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61304148	1.00[AMR][1000 genomes]
rs61702402	0.83[AFR][1000 genomes]
rs73587763	1.00[AMR][1000 genomes]
rs73587767	1.00[AMR][1000 genomes]
rs74111721	1.00[AMR][1000 genomes]
rs74111722	1.00[AMR][1000 genomes]
rs74111724	1.00[AMR][1000 genomes]
rs74111777	1.00[AMR][1000 genomes]
rs74111791	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4853200-4857800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:4854600-4857600	Enhancers	Osteobl	bone
3	chr10:4855000-4857200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:4855000-4857200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:4855400-4856600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr10:4855400-4856800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:4855400-4856800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:4855400-4857000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:4855400-4857000	Weak transcription	Esophagus	oesophagus
10	chr10:4855400-4867400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:4855600-4856600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:4855600-4856600	Weak transcription	A549	lung
13	chr10:4855600-4856600	Weak transcription	NHDF-Ad	bronchial
14	chr10:4855600-4856800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:4855600-4856800	Weak transcription	HMEC	breast
16	chr10:4855600-4856800	Weak transcription	HUVEC	blood vessel
17	chr10:4855600-4857000	Weak transcription	K562	blood
18	chr10:4855600-4857200	Weak transcription	NHEK	skin
19	chr10:4855600-4857400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:4855600-4862800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:4855800-4857200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr10:4856400-4856600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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