Variant report

Variant	rs74111722
Chromosome Location	chr10:4853394-4853395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4852442..4855384-chr10:4879168..4880754,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55806464	1.00[AMR][1000 genomes]
rs59633166	1.00[EUR][1000 genomes]
rs60398975	1.00[AMR][1000 genomes]
rs61304148	1.00[AMR][1000 genomes]
rs6601856	1.00[EUR][1000 genomes]
rs7085135	1.00[EUR][1000 genomes]
rs7087263	1.00[EUR][1000 genomes]
rs73587763	1.00[AMR][1000 genomes]
rs73587767	1.00[AMR][1000 genomes]
rs73603372	1.00[EUR][1000 genomes]
rs74111721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74111724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74111777	1.00[AMR][1000 genomes]
rs74111791	1.00[AMR][1000 genomes]
rs7899420	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4846000-4854200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:4847400-4854000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:4850000-4853800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:4850400-4853600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr10:4851000-4854600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:4851000-4854800	Weak transcription	NHEK	skin
7	chr10:4851200-4854000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:4851400-4853800	Weak transcription	NHLF	lung
9	chr10:4851400-4854000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:4852200-4853400	Weak transcription	HMEC	breast
11	chr10:4852200-4854400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr10:4852400-4853600	Weak transcription	A549	lung
13	chr10:4852400-4853800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr10:4852400-4854000	Weak transcription	HSMMtube	muscle
15	chr10:4852600-4853600	Weak transcription	HSMM	muscle
16	chr10:4852600-4853600	Weak transcription	NHDF-Ad	bronchial
17	chr10:4852600-4853800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:4852600-4854000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:4852600-4854000	Weak transcription	Osteobl	bone
20	chr10:4852600-4854200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:4852800-4854200	Weak transcription	NH-A	brain
22	chr10:4852800-4855000	Weak transcription	HUVEC	blood vessel
23	chr10:4853200-4855600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:4853200-4857800	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links