Variant report
Variant | rs55808394 |
---|---|
Chromosome Location | chr13:62806029-62806030 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr13:62805513..62806033-chr5:25238045..25239045,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs56144925 | 1.00[AFR][1000 genomes] |
rs58838518 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs60074789 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs60588990 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs61622789 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73489953 | 1.00[AMR][1000 genomes] |
rs73493941 | 1.00[AMR][1000 genomes] |
rs73493945 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73493980 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73493981 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73493984 | 1.00[AMR][1000 genomes] |
rs73493993 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73496112 | 1.00[AMR][1000 genomes] |
rs73496128 | 1.00[AMR][1000 genomes] |
rs73498204 | 1.00[AMR][1000 genomes] |
rs73498276 | 1.00[AMR][1000 genomes] |
rs74082462 | 1.00[AMR][1000 genomes] |
rs74082471 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv948810 | chr13:62003256-62968196 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
2 | nsv832630 | chr13:62651865-62811428 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
3 | nsv900257 | chr13:62782367-62907090 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:62806000-62806400 | Enhancers | GM12878-XiMat | blood |