Variant report

Variant	rs73489953
Chromosome Location	chr13:62782719-62782720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55808394	1.00[AMR][1000 genomes]
rs57113561	0.84[AFR][1000 genomes]
rs58838518	1.00[AMR][1000 genomes]
rs60074789	1.00[AMR][1000 genomes]
rs60588990	1.00[AMR][1000 genomes]
rs61622789	1.00[AMR][1000 genomes]
rs73493941	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73493945	1.00[AMR][1000 genomes]
rs73493980	1.00[AMR][1000 genomes]
rs73493981	1.00[AMR][1000 genomes]
rs73493984	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73493993	1.00[AMR][1000 genomes]
rs73496112	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73496128	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498204	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498276	1.00[AMR][1000 genomes]
rs74082462	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74082471	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832630	chr13:62651865-62811428	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900257	chr13:62782367-62907090	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62782600-62782800	Flanking Active TSS	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links