Variant report

Variant	rs73496112
Chromosome Location	chr13:62825271-62825272
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55808394	1.00[AMR][1000 genomes]
rs57113561	0.82[AFR][1000 genomes]
rs58838518	1.00[AMR][1000 genomes]
rs60074789	1.00[AMR][1000 genomes]
rs60588990	1.00[AMR][1000 genomes]
rs61622789	1.00[AMR][1000 genomes]
rs73489953	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73493941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73493945	1.00[AMR][1000 genomes]
rs73493980	1.00[AMR][1000 genomes]
rs73493981	1.00[AMR][1000 genomes]
rs73493984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73493993	1.00[AMR][1000 genomes]
rs73496128	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498204	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498276	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74082462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74082471	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv900257	chr13:62782367-62907090	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv561893	chr13:62807570-62885877	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62824000-62826200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:62824400-62825600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr13:62824600-62826000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr13:62824800-62825400	Enhancers	Hela-S3	cervix
5	chr13:62825200-62832600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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