Variant report

Variant	rs55810950
Chromosome Location	chr9:98781836-98781837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98779093..98782879-chr9:98784217..98786227,3	K562	blood:
2	chr9:98770913..98773359-chr9:98780439..98781981,2	MCF-7	breast:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10512243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1410297	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16910291	0.90[AMR][1000 genomes]
rs16910302	0.98[AMR][1000 genomes]
rs16910370	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16910376	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16910382	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17303045	0.88[AMR][1000 genomes]
rs17304942	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17305138	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17305329	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17305917	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs17394582	0.90[AMR][1000 genomes]
rs17394881	0.98[AMR][1000 genomes]
rs17396240	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17396338	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17396553	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17396860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1972802	0.86[AMR][1000 genomes]
rs2149099	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2149100	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2176026	1.00[AMR][1000 genomes]
rs3802439	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4144585	1.00[AMR][1000 genomes]
rs55645821	0.81[EUR][1000 genomes]
rs55699149	0.90[AMR][1000 genomes]
rs55746108	0.90[AMR][1000 genomes]
rs55787215	0.84[EUR][1000 genomes]
rs55923424	0.90[AMR][1000 genomes]
rs55983886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56016781	0.90[AFR][1000 genomes]
rs56108623	0.98[AMR][1000 genomes]
rs56162045	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56217203	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56225283	0.81[EUR][1000 genomes]
rs56379566	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56678652	1.00[AMR][1000 genomes]
rs62559011	0.90[AMR][1000 genomes]
rs62559012	0.90[AMR][1000 genomes]
rs62559013	0.90[AMR][1000 genomes]
rs62559025	0.90[AMR][1000 genomes]
rs62559027	0.90[AMR][1000 genomes]
rs62559029	0.93[AMR][1000 genomes]
rs62559030	0.93[AMR][1000 genomes]
rs62559031	0.93[AMR][1000 genomes]
rs62559053	0.98[AMR][1000 genomes]
rs62559054	1.00[AMR][1000 genomes]
rs62559055	1.00[AMR][1000 genomes]
rs62559057	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62559058	0.98[AMR][1000 genomes]
rs62559059	1.00[AMR][1000 genomes]
rs62559760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62559762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62559763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62559766	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62559769	0.84[EUR][1000 genomes]
rs62559794	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs62559796	0.81[EUR][1000 genomes]
rs62562960	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62562961	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62562963	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62562966	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62562967	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62562970	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62562979	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62562980	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62562981	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62562982	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62562985	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62562986	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62562989	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62562992	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73532684	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	nsv524266	chr9:98780606-98804274	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98714000-98782600	Weak transcription	HUVEC	blood vessel
2	chr9:98734600-98782400	Weak transcription	NHEK	skin
3	chr9:98747800-98782800	Weak transcription	Fetal Kidney	kidney
4	chr9:98748000-98782600	Weak transcription	HMEC	breast
5	chr9:98748400-98782800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr9:98768600-98782600	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:98771600-98782600	Weak transcription	Placenta	Placenta
8	chr9:98771600-98782800	Weak transcription	A549	lung
9	chr9:98771600-98783000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:98771800-98782600	Weak transcription	Ovary	ovary
11	chr9:98772200-98782600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr9:98772200-98782800	Weak transcription	Brain Angular Gyrus	brain
13	chr9:98772600-98782400	Weak transcription	Brain Hippocampus Middle	brain
14	chr9:98773600-98782600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr9:98773800-98782400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr9:98773800-98782800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr9:98774000-98782600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr9:98774600-98782600	Weak transcription	Brain Anterior Caudate	brain
19	chr9:98775200-98782800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:98775200-98783000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:98776600-98782800	Weak transcription	Brain Substantia Nigra	brain
22	chr9:98776600-98782800	Weak transcription	Gastric	stomach
23	chr9:98777000-98782400	Weak transcription	Fetal Lung	lung
24	chr9:98777200-98782600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr9:98777200-98782600	Weak transcription	HepG2	liver
26	chr9:98777200-98782800	Weak transcription	Esophagus	oesophagus
27	chr9:98777200-98783000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr9:98778800-98782800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr9:98778800-98782800	Weak transcription	HSMM	muscle
30	chr9:98779000-98782800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr9:98779200-98782600	Weak transcription	GM12878-XiMat	blood
32	chr9:98779400-98782800	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr9:98779600-98782000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr9:98779600-98782400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr9:98779600-98782800	Weak transcription	Aorta	Aorta
36	chr9:98779600-98782800	Weak transcription	Liver	Liver
37	chr9:98779800-98782000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr9:98779800-98782600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr9:98779800-98782800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr9:98780000-98782200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr9:98780000-98782800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr9:98780000-98782800	Weak transcription	Pancreas	Pancrea
43	chr9:98780200-98782400	Weak transcription	Fetal Stomach	stomach
44	chr9:98780200-98782600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr9:98780200-98782800	Weak transcription	Stomach Smooth Muscle	stomach
46	chr9:98780400-98783000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr9:98781200-98782000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr9:98781400-98782600	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr9:98781400-98782800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr9:98781600-98782000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell

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