Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98793079..98797604-chr9:98797988..98801744,7	MCF-7	breast:
2	chr9:98799452..98800997-chr9:98990617..98993276,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10512243	0.84[EUR][1000 genomes]
rs16910436	0.84[AFR][1000 genomes]
rs17305138	0.84[EUR][1000 genomes]
rs17305329	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17305917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17396240	0.84[EUR][1000 genomes]
rs17396338	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17396553	0.84[EUR][1000 genomes]
rs17396860	0.84[EUR][1000 genomes]
rs34191478	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3802439	0.84[EUR][1000 genomes]
rs55645821	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55787215	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55810950	0.81[EUR][1000 genomes]
rs55983886	0.84[EUR][1000 genomes]
rs56016781	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62559760	0.84[EUR][1000 genomes]
rs62559762	0.84[EUR][1000 genomes]
rs62559763	0.84[EUR][1000 genomes]
rs62559766	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62559769	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62559794	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62559796	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62562988	0.84[AFR][1000 genomes]
rs62562992	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	nsv524266	chr9:98780606-98804274	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3382610	chr9:98798281-98800379	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1809137	chr9:98798752-98823646	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98790800-98810800	Weak transcription	Brain Angular Gyrus	brain
2	chr9:98793600-98800800	Weak transcription	Brain Substantia Nigra	brain
3	chr9:98793600-98804600	Weak transcription	Fetal Heart	heart
4	chr9:98794400-98801000	Weak transcription	Colon Smooth Muscle	Colon
5	chr9:98796800-98802000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr9:98798000-98800600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr9:98798200-98801000	Weak transcription	Fetal Lung	lung
8	chr9:98798800-98802400	Weak transcription	Fetal Brain Male	brain
9	chr9:98799200-98804600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr9:98799400-98800000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:98799400-98800000	Enhancers	Pancreas	Pancrea

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