Variant report

Variant	rs34191478
Chromosome Location	chr9:98801296-98801297
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16910436	0.84[AFR][1000 genomes]
rs17305329	0.90[AFR][1000 genomes]
rs17305917	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17396338	0.90[AFR][1000 genomes]
rs55645821	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55787215	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56016781	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56225283	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62559766	0.92[AFR][1000 genomes]
rs62559769	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62559794	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62559796	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62562988	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	nsv524266	chr9:98780606-98804274	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv1809137	chr9:98798752-98823646	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98790800-98810800	Weak transcription	Brain Angular Gyrus	brain
2	chr9:98793600-98804600	Weak transcription	Fetal Heart	heart
3	chr9:98796800-98802000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr9:98798800-98802400	Weak transcription	Fetal Brain Male	brain
5	chr9:98799200-98804600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr9:98800600-98802000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr9:98800800-98801400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
8	chr9:98800800-98801600	ZNF genes & repeats	Fetal Muscle Leg	muscle
9	chr9:98800800-98801800	ZNF genes & repeats	Brain Substantia Nigra	brain
10	chr9:98800800-98801800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
11	chr9:98800800-98802200	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
12	chr9:98801000-98801400	ZNF genes & repeats	Fetal Lung	lung
13	chr9:98801200-98801600	ZNF genes & repeats	Brain Hippocampus Middle	brain
14	chr9:98801200-98801800	ZNF genes & repeats	HSMMtube	muscle
15	chr9:98801200-98802000	ZNF genes & repeats	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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