Variant report

Variant	rs16910436
Chromosome Location	chr9:98752496-98752497
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98681098..98682813-chr9:98750330..98752671,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10512244	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16910396	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16910422	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17305329	0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs17396338	0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs34191478	0.84[AFR][1000 genomes]
rs4743443	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55645821	0.88[AFR][1000 genomes]
rs55787215	0.90[AFR][1000 genomes]
rs55936120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56087522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56225283	0.84[AFR][1000 genomes]
rs62559766	0.92[AFR][1000 genomes]
rs62559769	0.90[AFR][1000 genomes]
rs62562988	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62563008	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	nsv893600	chr9:98608989-98775459	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98706400-98777400	Weak transcription	Psoas Muscle	Psoas
2	chr9:98714000-98782600	Weak transcription	HUVEC	blood vessel
3	chr9:98719200-98752800	Weak transcription	Pancreas	Pancrea
4	chr9:98719200-98764200	Weak transcription	Spleen	Spleen
5	chr9:98719200-98767800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr9:98719400-98767200	Weak transcription	Right Ventricle	heart
7	chr9:98719400-98771000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:98719600-98766800	Weak transcription	Colon Smooth Muscle	Colon
9	chr9:98726400-98767800	Weak transcription	Gastric	stomach
10	chr9:98734600-98764400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr9:98734600-98767800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr9:98734600-98782400	Weak transcription	NHEK	skin
13	chr9:98735400-98778400	Weak transcription	Hela-S3	cervix
14	chr9:98735800-98764200	Weak transcription	Placenta	Placenta
15	chr9:98735800-98766600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr9:98735800-98770600	Weak transcription	K562	blood
17	chr9:98735800-98771200	Weak transcription	HepG2	liver
18	chr9:98736200-98752800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr9:98736600-98778800	Weak transcription	Fetal Brain Male	brain
20	chr9:98737000-98766800	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr9:98738800-98756400	Weak transcription	Aorta	Aorta
22	chr9:98741800-98778600	Weak transcription	NH-A	brain
23	chr9:98743200-98755800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr9:98744600-98768000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr9:98744800-98752800	Weak transcription	Brain Anterior Caudate	brain
26	chr9:98744800-98753000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr9:98744800-98753000	Weak transcription	Brain Substantia Nigra	brain
28	chr9:98744800-98753200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr9:98744800-98755400	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr9:98744800-98766800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr9:98744800-98770800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr9:98744800-98771000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr9:98745000-98755600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr9:98745000-98766800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr9:98745200-98753200	Weak transcription	Fetal Lung	lung
36	chr9:98747200-98753000	Strong transcription	Primary B cells from cord blood	blood
37	chr9:98747200-98753800	Strong transcription	Primary T cells from cord blood	blood
38	chr9:98747800-98753000	Weak transcription	Left Ventricle	heart
39	chr9:98747800-98782800	Weak transcription	Fetal Kidney	kidney
40	chr9:98748000-98764200	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr9:98748000-98782600	Weak transcription	HMEC	breast
42	chr9:98748200-98753000	Weak transcription	Esophagus	oesophagus
43	chr9:98748200-98758200	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr9:98748200-98771000	Weak transcription	Fetal Heart	heart
45	chr9:98748400-98752600	Weak transcription	Brain Hippocampus Middle	brain
46	chr9:98748400-98755400	Weak transcription	Adipose Nuclei	Adipose
47	chr9:98748400-98756400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr9:98748400-98758000	Weak transcription	Duodenum Mucosa	Duodenum
49	chr9:98748400-98764200	Weak transcription	Fetal Intestine Large	intestine
50	chr9:98748400-98766600	Weak transcription	HSMM	muscle

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