Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98781352..98784533-chr9:98785992..98788272,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225194	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10512243	0.87[EUR][1000 genomes]
rs16910436	0.90[AFR][1000 genomes]
rs17305138	0.87[EUR][1000 genomes]
rs17305329	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs17305917	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17396240	0.87[EUR][1000 genomes]
rs17396338	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs17396553	0.87[EUR][1000 genomes]
rs17396860	0.87[EUR][1000 genomes]
rs34191478	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3802439	0.87[EUR][1000 genomes]
rs55645821	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55787215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55810950	0.84[EUR][1000 genomes]
rs55983886	0.87[EUR][1000 genomes]
rs56016781	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56225283	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62559760	0.87[EUR][1000 genomes]
rs62559762	0.87[EUR][1000 genomes]
rs62559763	0.87[EUR][1000 genomes]
rs62559766	0.98[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62559794	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62559796	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62562988	0.86[AFR][1000 genomes]
rs62562992	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	nsv524266	chr9:98780606-98804274	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98784400-98788800	Weak transcription	Gastric	stomach
2	chr9:98785000-98788200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:98785200-98788400	Weak transcription	Right Ventricle	heart
4	chr9:98785400-98788800	Weak transcription	Brain Angular Gyrus	brain
5	chr9:98785400-98788800	Weak transcription	Ovary	ovary
6	chr9:98785400-98788800	Weak transcription	Right Atrium	heart
7	chr9:98785400-98789000	Weak transcription	Brain Anterior Caudate	brain
8	chr9:98785400-98789000	Weak transcription	Spleen	Spleen
9	chr9:98785600-98789000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr9:98785600-98789000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr9:98786000-98788800	Weak transcription	Fetal Lung	lung
12	chr9:98786200-98788800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr9:98786400-98789600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:98786600-98789000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

Quick Search: