Variant report

Variant	rs55811442
Chromosome Location	chr2:56193385-56193386
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10518794	1.00[EUR][1000 genomes]
rs13429887	0.84[EUR][1000 genomes]
rs14282	0.84[EUR][1000 genomes]
rs55676306	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55749412	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55845766	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55886642	0.84[EUR][1000 genomes]
rs55912959	0.85[EUR][1000 genomes]
rs56058144	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56195925	0.85[EUR][1000 genomes]
rs56309449	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56412571	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72811719	0.84[EUR][1000 genomes]
rs72813864	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72813868	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72813873	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72813875	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72813877	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72813878	0.85[EUR][1000 genomes]
rs72813879	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72813880	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72813884	0.85[EUR][1000 genomes]
rs72813888	0.85[EUR][1000 genomes]
rs72813889	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72813894	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72813900	0.89[AMR][1000 genomes]
rs72813901	0.89[AMR][1000 genomes]
rs72813902	0.89[AMR][1000 genomes]
rs72815903	0.89[AMR][1000 genomes]
rs72815905	0.89[AMR][1000 genomes]
rs72815906	0.89[AMR][1000 genomes]
rs72815909	0.89[AMR][1000 genomes]
rs72815910	0.89[AMR][1000 genomes]
rs72815912	0.89[AMR][1000 genomes]
rs7600678	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv874161	chr2:56154316-56203798	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2757799	chr2:56178439-56472394	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
4	esv2759051	chr2:56178439-56472394	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56191000-56195800	Enhancers	HUVEC	blood vessel
2	chr2:56192000-56194000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:56192200-56194200	Enhancers	Colon Smooth Muscle	Colon
4	chr2:56192400-56194000	Enhancers	Ovary	ovary
5	chr2:56192400-56194000	Enhancers	Pancreas	Pancrea
6	chr2:56192400-56194200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr2:56192600-56193600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:56192600-56193800	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr2:56192600-56194000	Enhancers	Fetal Muscle Leg	muscle
10	chr2:56192600-56194200	Enhancers	Adipose Nuclei	Adipose
11	chr2:56192800-56193400	Weak transcription	Spleen	Spleen
12	chr2:56192800-56193600	Weak transcription	Right Atrium	heart
13	chr2:56193000-56193400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr2:56193000-56193400	Enhancers	Fetal Heart	heart
15	chr2:56193000-56194000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:56193000-56194000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr2:56193000-56194000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr2:56193000-56194000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr2:56193000-56194000	Enhancers	Fetal Kidney	kidney
20	chr2:56193000-56194000	Enhancers	Fetal Lung	lung
21	chr2:56193000-56194000	Enhancers	Fetal Stomach	stomach
22	chr2:56193000-56194000	Enhancers	Osteobl	bone
23	chr2:56193000-56194200	Enhancers	Brain Anterior Caudate	brain
24	chr2:56193000-56194200	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr2:56193200-56193600	Enhancers	Primary hematopoietic stem cells	blood
26	chr2:56193200-56193800	Enhancers	HSMM	muscle
27	chr2:56193200-56193800	Enhancers	NH-A	brain
28	chr2:56193200-56194000	Enhancers	Muscle Satellite Cultured Cells	--
29	chr2:56193200-56194000	Enhancers	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links