Variant report

Variant	rs72815909
Chromosome Location	chr2:56258179-56258180
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:56256665..56259031-chr2:56263506..56265195,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs55676306	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55749412	0.89[AMR][1000 genomes]
rs55811442	0.89[AMR][1000 genomes]
rs55845766	0.89[AMR][1000 genomes]
rs55912959	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56058144	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56195925	0.81[EUR][1000 genomes]
rs56309449	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56412571	0.89[AMR][1000 genomes]
rs72813864	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72813868	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72813873	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72813875	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72813877	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72813878	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72813879	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72813880	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72813884	0.81[EUR][1000 genomes]
rs72813888	0.81[EUR][1000 genomes]
rs72813889	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72813894	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72813900	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72813901	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72813902	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72815903	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72815905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72815906	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72815907	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72815910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72815912	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72815915	0.89[AMR][1000 genomes]
rs7600678	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv2757799	chr2:56178439-56472394	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	esv2759051	chr2:56178439-56472394	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
4	nsv520175	chr2:56228351-56331375	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv874162	chr2:56255832-56480571	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56254200-56260800	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links